Motif HL_61996.1 Version HL_61996.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_049 | 7A0S | 0.1334 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH |
| 2 | HL_9DFE_048 | 9DFE | 0.1260 | 3 | 1A | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 3 | HL_5J7L_183 | 5J7L | 0.0000 | 3 | DA | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 4 | HL_4WF9_047 | 4WF9 | 0.0985 | 3 | X | LSU rRNA | G | 2054 | U | 2055 | G | 2056 | A | 2060 | U | 2061 | G | 2062 | C | 2063 | cWW | tWH |
| 5 | HL_4V9F_052 | 4V9F | 0.1290 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH |
| 6 | HL_8P9A_162 | 8P9A | 0.3301 | 3 | AR | LSU rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAGAUGC | 2 |
| GUAAAGAUGC | 1 |
| GUGAGAUGC | 1 |
| GUGCGGAGUC | 1 |
| GGGAACGGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAGAUG | 2 |
| UAAAGAUG | 1 |
| UG(6MZ)AGAUG | 1 |
| UGCGGAGU | 1 |
| GGAACGGG | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.18 | Max 0.37
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