Motif HL_62228.3 Version HL_62228.3 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_004 | 4BPP | 0.6278 | 0 | A | 18S RRNA | C | 185 | C | 186 | U | 187 | G | 188 | C | 189 | G | 190 | cWW | tSW | |
| 2 | HL_1S72_025 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 877 | G | 878 | cWW | tSW | |
| 3 | HL_3V2F_024 | 3V2F | 0.1942 | 1 | A | 23S Ribosomal RNA | U | 779 | G | 780 | A | 782 | A | 783 | A | 784 | G | 785 | cWW | tSW | |
| 4 | HL_4IOA_023 | 4IOA | 0.5708 | 1 | UNCG variation (H) | X | LSU rRNA | U | 792 | G | 793 | A | 795 | A | 796 | A | 797 | G | 798 | cWW | ncSW |
| 5 | HL_2QBG_025 | 2QBG | 0.7392 | 1 | B | 23S rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 784 | G | 785 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| UGAAAAG | 2 |
| CCUGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 2 |
| GAAAA | 2 |
| CUGC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_62228.3 | Only in the parent motif |
|---|---|---|---|
| HL_62228.2 Compare | HL_3V2F_024, HL_1S72_025, HL_2QBG_025, HL_4IOA_023 | HL_4BPP_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_62228.3 | Only in the child motif |
|---|---|---|---|
| HL_62228.4 Compare | HL_1S72_025, HL_2QBG_025, HL_4IOA_023, HL_4BPP_004 | HL_3V2F_024 | HL_4NVV_023, HL_1VW3_016 |
- Annotations
-
- (4)
- UNCG variation (H) (1)
- Basepair signature
- cWW-R-tSW-R
- Heat map statistics
- Min 0.19 | Avg 0.53 | Max 0.98
Coloring options: