Motif HL_62228.4 Version HL_62228.4 of this group appears in releases 1.14 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_025 | 2QBG | 0.7427 | 1 | B | 23S rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 784 | G | 785 | cWW | ntSH |
| 2 | HL_4IOA_023 | 4IOA | 0.5648 | 1 | X | LSU rRNA | U | 792 | G | 793 | A | 795 | A | 796 | A | 797 | G | 798 | cWW | ncSW |
| 3 | HL_4NVV_023 | 4NVV | 0.2072 | 1 | A | 23S Ribosomal RNA | U | 826 | G | 827 | A | 829 | A | 830 | A | 831 | G | 832 | cWW | tSW |
| 4 | HL_1S72_025 | 1S72 | 0.1841 | 1 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 877 | G | 878 | cWW | tSW |
| 5 | HL_1VW3_016 | 1VW3 | 0.0000 | 1 | A | 21S ribosomal RNA | U | 670 | G | 671 | A | 673 | A | 674 | G | 675 | A | 676 | cWW | tSW |
| 6 | HL_4BPP_004 | 4BPP | 0.6185 | 0 | A | 18S RRNA | C | 185 | C | 186 | U | 187 | G | 188 | C | 189 | G | 190 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| UGAAAAG | 2 |
| UGAAAGA | 1 |
| CCUGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 3 |
| GAAAA | 2 |
| CUGC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_62228.4 | Only in the parent motif |
|---|---|---|---|
| HL_62228.3 Compare | HL_1S72_025, HL_2QBG_025, HL_4IOA_023, HL_4BPP_004 | HL_4NVV_023, HL_1VW3_016 | HL_3V2F_024 |
Children motifs
| Child motif | Common motif instances | Only in HL_62228.4 | Only in the child motif |
|---|---|---|---|
| HL_62228.5 Compare | HL_1S72_025, HL_4NVV_023, HL_2QBG_025, HL_4BPP_004, HL_1VW3_016, HL_4IOA_023 | HL_1VWW_075 |
- Annotations
-
- (6)
- Basepair signature
- cWW-R-tSW-R
- Heat map statistics
- Min 0.18 | Avg 0.49 | Max 0.98
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