Motif HL_62228.5 Version HL_62228.5 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_075 | 1VWW | 0.8392 | 0 | 8 | C | 107 | A | 108 | C | 109 | U | 110 | U | 111 | G | 112 | ncWW | |
| 2 | HL_2QBG_025 | 2QBG | 0.7427 | 1 | B | U | 779 | G | 780 | A | 782 | A | 783 | G | 784 | G | 785 | cWW | ntSH |
| 3 | HL_4IOA_023 | 4IOA | 0.5648 | 1 | X | U | 792 | G | 793 | A | 795 | A | 796 | A | 797 | G | 798 | cWW | ncSW |
| 4 | HL_4NVV_023 | 4NVV | 0.2072 | 1 | A | U | 826 | G | 827 | A | 829 | A | 830 | A | 831 | G | 832 | cWW | tSW |
| 5 | HL_1S72_025 | 1S72 | 0.1841 | 1 | 0 | U | 872 | G | 873 | A | 875 | A | 876 | G | 877 | G | 878 | cWW | tSW |
| 6 | HL_1VW3_016 | 1VW3 | 0.0000 | 1 | A | U | 670 | G | 671 | A | 673 | A | 674 | G | 675 | A | 676 | cWW | tSW |
| 7 | HL_4BPP_004 | 4BPP | 0.6185 | 0 | A | C | 185 | C | 186 | U | 187 | G | 188 | C | 189 | G | 190 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| UGAAAAG | 2 |
| CACUUG | 1 |
| UGAAAGA | 1 |
| CCUGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 3 |
| GAAAA | 2 |
| ACUU | 1 |
| CUGC | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_62228.5 | Only in the parent motif |
|---|---|---|---|
| HL_62228.4 Compare | HL_1S72_025, HL_4NVV_023, HL_2QBG_025, HL_4BPP_004, HL_1VW3_016, HL_4IOA_023 | HL_1VWW_075 |
Children motifs
| Child motif | Common motif instances | Only in HL_62228.5 | Only in the child motif |
|---|---|---|---|
| HL_62228.6 Compare | HL_1S72_025, HL_2QBG_025, HL_4BPP_004, HL_1VW3_016, HL_4IOA_023, HL_1VWW_075 | HL_4NVV_023 | HL_4QCN_023 |
- Annotations
-
- (7)
- Basepair signature
- cWW-R-tSW-R
- Heat map statistics
- Min 0.18 | Avg 0.57 | Max 0.98
Coloring options: