Motif HL_64690.2 Version HL_64690.2 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7	2-8
1	HL_2DER_005	2DER	0.4066	1	D	tRNA	C	31	C	32	U	33	U	35	C	36	A	37	C	38	G	39	cWW
2	HL_4WF9_064	4WF9	0.1893	1	X	LSU rRNA	A	2839	A	2841	G	2842	A	2843	U	2844	G	2845	A	2846	U	2847	cWW	cSW
3	HL_7A0S_067	7A0S	0.1470	1	X	LSU rRNA	G	2794	A	2796	G	2797	A	2798	C	2799	C	2800	A	2801	C	2802	cWW	cSW
4	HL_8VTW_067	8VTW	0.1327	1	1A	LSU rRNA	G	2819	A	2821	G	2822	A	2823	C	2824	C	2825	A	2826	C	2827	cWW	cSW
5	HL_5J7L_201	5J7L	0.0000	1	DA	LSU rRNA	G	2819	A	2821	G	2822	A	2823	C	2824	G	2825	A	2826	C	2827	cWW	cSW
6	HL_8C3A_071	8C3A	0.1488	1	1	LSU rRNA	G	3268	A	3270	U	3271	A	3272	C	3273	G	3274	A	3275	C	3276	cWW	cSW
7	HL_5TBW_070	5TBW	0.1727	1	1	LSU rRNA	G	3303	A	3305	U	3306	A	3307	C	3308	G	3309	A	3310	C	3311	cWW	cSW
8	HL_4V9F_069	4V9F	0.2033	1	0	LSU rRNA	G	2836	A	2838	C	2839	A	2840	A	2841	G	2842	A	2843	C	2844	cWW	cSW
9	HL_5TBW_028	5TBW	0.5489	2	1	LSU rRNA	G	1266	U	1267	G	1268	U	1269	C	1272	A	1273	A	1274	C	1275	ncWW		ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAGACCAC	2
CCUUUCACG	1
AAAGAUGAU	1
GAAGACGAC	1
GCAUACGAC	1
GUAUACGAC	1
GUACAAGAC	1
GUGUAACAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGACCA	2
CUUUCAC	1
AAGAUGA	1
AAGACGA	1
CAUACGA	1
UAUACGA	1
UACAAGA	1
UGUAACAA	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-cSW-F-F-F-F
Heat map statistics: Min 0.09 | Avg 0.29 | Max 0.67

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