Motif HL_64803.1 Version HL_64803.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-10 | 4-9 | 4-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5F_014 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH | ||
| 2 | HL_4CUX_013 | 4CUX | 0.9850 | 3 | 2 | 18S RRNA | G | 486 | G | 487 | G | 488 | C | 489 | C | 490 | C | 491 | A | 492 | G | 496 | G | 497 | G | 498 | U | 499 | C | 500 | U | 501 | ncWS | ncWW | ntHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUGUAAAUACCU | 1 |
| GGGCCCAUUCGGGUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGUAAAUACC | 1 |
| GGCCCAUUCGGGUC | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_64803.1 | Only in the parent motif |
|---|---|---|---|
| HL_62970.1 Compare | HL_3U5F_014 | HL_4CUX_013 |
Children motifs
| Child motif | Common motif instances | Only in HL_64803.1 | Only in the child motif |
|---|---|---|---|
| HL_34954.1 Compare | HL_3U5F_014 | HL_4CUX_013 | HL_4CUX_014, HL_1VX2_007, HL_1VX2_013 |
| HL_74451.1 Compare | HL_4CUX_013 | HL_3U5F_014 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.99 | Avg 0.49 | Max 0.99
Coloring options: