Motif HL_64887.1 Version HL_64887.1 of this group appears in releases 3.12 to 3.21
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4TUE_033 | 4TUE | 0.0000 | 6 | tRNA D-loop | QV | tRNA | C | 12 | A | 13 | G | 14 | A | 21 | G | 22 | cWW | cWS |
| 2 | HL_5WT1_001 | 5WT1 | 0.4144 | 6 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 1 |
| CAGCCUGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 1 |
| AGCCUGGGA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (2)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.41 | Avg 0.21 | Max 0.41
Coloring options: