Motif HL_64970.1 Version HL_64970.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4OQU_002 | 4OQU | 0.3941 | 4 | A | SAM-I/IV riboswitch | G | 32 | G | 36 | A | 37 | C | 38 | C | 40 | cWW | |
| 2 | HL_7RQB_038 | 7RQB | 0.2837 | 2 | 1A | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | |
| 3 | HL_5J7L_170 | 5J7L | 0.2118 | 2 | DA | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | |
| 4 | HL_5TBW_032 | 5TBW | 0.2462 | 2 | 1 | LSU rRNA | A | 1506 | C | 1508 | A | 1509 | G | 1510 | U | 1512 | cWW | |
| 5 | HL_7A0S_033 | 7A0S | 0.1664 | 2 | X | LSU rRNA | G | 1337 | U | 1339 | C | 1340 | G | 1341 | C | 1343 | cWW | |
| 6 | HL_7RQB_034 | 7RQB | 0.1610 | 2 | 1A | LSU rRNA | G | 1324 | U | 1326 | C | 1327 | G | 1328 | C | 1330 | cWW | |
| 7 | HL_4WF9_033 | 4WF9 | 0.1382 | 2 | X | LSU rRNA | G | 1361 | U | 1363 | C | 1364 | G | 1365 | C | 1367 | cWW | |
| 8 | HL_4V9F_035 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | G | 1430 | U | 1432 | G | 1433 | A | 1434 | C | 1436 | cWW | |
| 9 | HL_5J7L_166 | 5J7L | 0.2328 | 2 | DA | LSU rRNA | G | 1324 | U | 1326 | A | 1327 | A | 1328 | C | 1330 | cWW | |
| 10 | HL_7A0S_037 | 7A0S | 0.4875 | 2 | X | LSU rRNA | G | 1508 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAAUC | 2 |
| GGUCGUC | 2 |
| GACGGACAC | 1 |
| AGCAGUU | 1 |
| GCUCGUC | 1 |
| GCUGAUC | 1 |
| GUUAAUC | 1 |
| GAAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAU | 2 |
| GUCGU | 2 |
| ACGGACA | 1 |
| GCAGU | 1 |
| CUCGU | 1 |
| CUGAU | 1 |
| UUAAU | 1 |
| AAAAU | 1 |
Coloring options: