Motif HL_64970.1 Version HL_64970.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5
1	HL_4OQU_002	4OQU	0.3941	4	Pseudoknot geometry	A	SAM-I/IV riboswitch	G	32	G	36	A	37	C	38	C	40	cWW
2	HL_7RQB_038	7RQB	0.2837	2	Pseudoknot geometry with 3' bulge (H)	1A	LSU rRNA	G	1492	A	1494	A	1495	A	1496	C	1498	cWW
3	HL_5J7L_170	5J7L	0.2118	2	Pseudoknot geometry with 3' bulge	DA	LSU rRNA	G	1492	A	1494	A	1495	A	1496	C	1498	cWW
4	HL_5TBW_032	5TBW	0.2462	2	Pseudoknot geometry with 3' bulge	1	LSU rRNA	A	1506	C	1508	A	1509	G	1510	U	1512	cWW
5	HL_7A0S_033	7A0S	0.1664	2	Pseudoknot geometry with 3' bulge	X	LSU rRNA	G	1337	U	1339	C	1340	G	1341	C	1343	cWW
6	HL_7RQB_034	7RQB	0.1610	2	Pseudoknot geometry with 3' bulge (H)	1A	LSU rRNA	G	1324	U	1326	C	1327	G	1328	C	1330	cWW
7	HL_4WF9_033	4WF9	0.1382	2	Pseudoknot geometry with 3' bulge	X	LSU rRNA	G	1361	U	1363	C	1364	G	1365	C	1367	cWW
8	HL_4V9F_035	4V9F	0.0000	2	Pseudoknot geometry with 3' bulge	0	LSU rRNA	G	1430	U	1432	G	1433	A	1434	C	1436	cWW
9	HL_5J7L_166	5J7L	0.2328	2	Pseudoknot geometry with 3' bulge	DA	LSU rRNA	G	1324	U	1326	A	1327	A	1328	C	1330	cWW
10	HL_7A0S_037	7A0S	0.4875	2		X	LSU rRNA	G	1508	A	1510	A	1511	A	1512	C	1514	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCAAAUC	2
GGUCGUC	2
GACGGACAC	1
AGCAGUU	1
GCUCGUC	1
GCUGAUC	1
GUUAAUC	1
GAAAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAAAU	2
GUCGU	2
ACGGACA	1
GCAGU	1
CUCGU	1
CUGAU	1
UUAAU	1
AAAAU	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Pseudoknot geometry with 3' bulge (6)
Pseudoknot geometry with 3' bulge (H) (2)
Pseudoknot geometry (1)
(1)
Basepair signature: cWW-F-F-F
Heat map statistics: Min 0.06 | Avg 0.29 | Max 0.58

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