Motif HL_65794.4 Version HL_65794.4 of this group appears in releases 3.94 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6
1	HL_3R4F_005	3R4F	0.4339	0	Pseudoknot geometry	A	pRNA	U	52	G	53	G	54	U	55	U	56	G	57	ncWW
2	HL_6UFM_005	6UFM	0.2346	0	Pseudoknot geometry	B	RNA (98-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW
3	HL_4V9F_067	4V9F	0.1939	0	Ribsomal LSU H95	0	LSU rRNA	C	2737	G	2738	A	2739	G	2740	A	2741	G	2742	cWW
4	HL_8P9A_177	8P9A	0.2085	0	Ribsomal LSU H95 (H)	AR	LSU rRNA	U	3068	G	3069	A	3070	U	3071	C	3072	A	3073	cWW
5	HL_7A0S_064	7A0S	0.0000	0	Ribsomal LSU H95	X	LSU rRNA	U	2680	A	2681	C	2682	C	2683	A	2684	A	2685	cWW
6	HL_5J7L_198	5J7L	0.0956	0	Ribsomal LSU H95	DA	LSU rRNA	U	2701	G	2702	C	2703	C	2704	A	2705	A	2706	cWW
7	HL_4WF9_061	4WF9	0.1430	0	Ribsomal LSU H95	X	LSU rRNA	U	2728	G	2729	C	2730	C	2731	A	2732	A	2733	cWW
8	HL_4PQV_002	4PQV	0.4043	1	Pseudoknot geometry	A	Flavivirus 3' UTR stem loop IV	C	28	G	29	C	30	C	31	G	32	G	34	cWW
9	HL_4GXY_003	4GXY	0.4893	1	Pseudoknot geometry	A	Adenosylcobalamin riboswitch	G	65	C	67	C	68	C	69	G	70	C	71	cWW
10	HL_8KEB_002	8KEB	0.5639	1		A	RNA (72-MER)	G	34	A	36	A	37	U	38	A	39	C	40	cWW
11	HL_8K1E_001	8K1E	0.6321	1		A	MALAT1-associated small cytoplasmic RNA/MEN beta RNA	G	23	A	25	C	26	G	27	G	28	C	29	cWW
12	HL_7YSE_002	7YSE	0.7718	1	Pseudoknot geometry	E	tRNA	U	32	G	34	C	35	C	36	A	37	A	38	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGCCAA	2
UGGUUG	1
GGAAAC	1
CGAGAG	1
UGAUCA	1
UACCAA	1
CGCCGAG	1
GUCCCGC	1
GCAAUAC	1
GCACGGC	1
UUGCCAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GCCA	2
GGUU	1
GAAA	1
GAGA	1
GAUC	1
ACCA	1
GCCGA	1
UCCCG	1
CAAUA	1
CACGG	1
UGCCA	1

Release history

Release	3.94
Date	2025-02-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Pseudoknot geometry (5)
Ribsomal LSU H95 (4)
(2)
Ribsomal LSU H95 (H) (1)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.10 | Avg 0.44 | Max 0.93

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