Motif HL_66677.2 Version HL_66677.2 of this group appears in releases 1.16 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4FAW_009 | 4FAW | 0.5520 | 1 | A | Group II catalytic intron D1-D4-3 | C | 368 | G | 369 | A | 371 | C | 372 | G | 373 | cWW | tSW | |
| 2 | HL_4KZD_001 | 4KZD | 0.0000 | 2 | Fab BL3-6 binding hairpin with tSW | R | RNA (84-MER) | G | 37 | A | 39 | C | 41 | A | 42 | C | 43 | cWW | tSW |
| 3 | HL_3IVK_008 | 3IVK | 0.0808 | 2 | C | class I ligase product | G | 59 | A | 61 | C | 63 | A | 64 | C | 65 | cWW | tSW | |
| 4 | HL_1VW3_039 | 1VW3 | 0.6527 | 1 | A | 21S ribosomal RNA | A | 2196 | A | 2197 | U | 2199 | C | 2200 | U | 2201 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAC | 2 |
| CGAACG | 1 |
| AAUUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACA | 2 |
| GAAC | 1 |
| AUUC | 1 |
Release history
| Release | 1.16 | 1.17 | 1.18 |
|---|---|---|---|
| Date | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_66677.2 | Only in the parent motif |
|---|---|---|---|
| HL_66677.1 Compare | HL_3IVK_008, HL_1VW3_039, HL_4FAW_009 | HL_4KZD_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Fab BL3-6 binding hairpin with tSW (1)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.08 | Avg 0.41 | Max 0.77
Coloring options: