RNA 3D Hub //

Motif HL_66853.7 Version HL_66853.7 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-64-5
1 HL_7UZ0_0017UZ00.33612A tRNAC13A14G15G18U19A20G21cWWncSH
2 HL_7E8O_0017E8O0.33452X tRNAC13A14G15G18U19A20G21cWWcSH
3 HL_4WJ4_0014WJ40.26913B tRNAC13A14G15G19U20A21G22cWWncSW
4 HL_4MGN_0024MGN0.27922BtRNA-glycineC13A14G15G18U19A20G21cWWncWScSH
5 HL_8S95_0018S950.22233CEnterovirus 5' cloverleaf cis-acting replication elementC13A14G15G19U20A21G22cWWncWSncSH
6 HL_6CU1_0036CU10.25492AY RNA-likeC58A59A60G63U64A65G66cWWcWScSH
7 HL_4YCP_0014YCP0.28313B tRNAC13A14A15G19U20A21G22cWWcWScSH
8 HL_4YCO_0014YCO0.23973D tRNAC13A14G15G19U20A21G22cWWcWScSH
9 HL_8UO6_0058UO60.00003BHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldC13A14G15G19U20A21G22cWWncWScSH
10 HL_8UO6_0018UO60.09133AHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldC13A14G15G19U20A21G22cWWncWScSH
11 HL_6UGG_0046UGG0.30564B tRNAC12A13G14G18U20A21G22cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGUCGGUAG5
CAGUGGUAG3
CAAUGGUAG1
CAAUUGGUAG1
CAGUCGGUUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGUCGGUA5
AGUGGUA3
AAUGGUA1
AAUUGGUA1
AGUCGGUUA1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
    • Basepair signature
    cWW-cWS-F-cSH
    Heat map statistics
    Min 0.09 | Avg 0.30 | Max 0.71
    Help

    Coloring options:

    HL_7UZ0_001:HL_7UZ0_001 = 0HL_7UZ0_001:HL_7E8O_001 = 0.2173HL_7UZ0_001:HL_4WJ4_001 = 0.2643HL_7UZ0_001:HL_4MGN_002 = 0.3613HL_7UZ0_001:HL_8S95_001 = 0.3984HL_7UZ0_001:HL_6CU1_003 = 0.399HL_7UZ0_001:HL_4YCP_001 = 0.4602HL_7UZ0_001:HL_4YCO_001 = 0.4115HL_7UZ0_001:HL_8UO6_005 = 0.3361HL_7UZ0_001:HL_8UO6_001 = 0.2917HL_7UZ0_001:HL_6UGG_004 = 0.7079HL_7E8O_001:HL_7UZ0_001 = 0.2173HL_7E8O_001:HL_7E8O_001 = 0HL_7E8O_001:HL_4WJ4_001 = 0.2615HL_7E8O_001:HL_4MGN_002 = 0.4003HL_7E8O_001:HL_8S95_001 = 0.3466HL_7E8O_001:HL_6CU1_003 = 0.3896HL_7E8O_001:HL_4YCP_001 = 0.4338HL_7E8O_001:HL_4YCO_001 = 0.384HL_7E8O_001:HL_8UO6_005 = 0.3345HL_7E8O_001:HL_8UO6_001 = 0.2903HL_7E8O_001:HL_6UGG_004 = 0.6875HL_4WJ4_001:HL_7UZ0_001 = 0.2643HL_4WJ4_001:HL_7E8O_001 = 0.2615HL_4WJ4_001:HL_4WJ4_001 = 0HL_4WJ4_001:HL_4MGN_002 = 0.3247HL_4WJ4_001:HL_8S95_001 = 0.2693HL_4WJ4_001:HL_6CU1_003 = 0.2954HL_4WJ4_001:HL_4YCP_001 = 0.3184HL_4WJ4_001:HL_4YCO_001 = 0.2971HL_4WJ4_001:HL_8UO6_005 = 0.2691HL_4WJ4_001:HL_8UO6_001 = 0.2732HL_4WJ4_001:HL_6UGG_004 = 0.4219HL_4MGN_002:HL_7UZ0_001 = 0.3613HL_4MGN_002:HL_7E8O_001 = 0.4003HL_4MGN_002:HL_4WJ4_001 = 0.3247HL_4MGN_002:HL_4MGN_002 = 0HL_4MGN_002:HL_8S95_001 = 0.3001HL_4MGN_002:HL_6CU1_003 = 0.3608HL_4MGN_002:HL_4YCP_001 = 0.3842HL_4MGN_002:HL_4YCO_001 = 0.3516HL_4MGN_002:HL_8UO6_005 = 0.2792HL_4MGN_002:HL_8UO6_001 = 0.3179HL_4MGN_002:HL_6UGG_004 = 0.4486HL_8S95_001:HL_7UZ0_001 = 0.3984HL_8S95_001:HL_7E8O_001 = 0.3466HL_8S95_001:HL_4WJ4_001 = 0.2693HL_8S95_001:HL_4MGN_002 = 0.3001HL_8S95_001:HL_8S95_001 = 0HL_8S95_001:HL_6CU1_003 = 0.2418HL_8S95_001:HL_4YCP_001 = 0.241HL_8S95_001:HL_4YCO_001 = 0.2297HL_8S95_001:HL_8UO6_005 = 0.2223HL_8S95_001:HL_8UO6_001 = 0.2601HL_8S95_001:HL_6UGG_004 = 0.3509HL_6CU1_003:HL_7UZ0_001 = 0.399HL_6CU1_003:HL_7E8O_001 = 0.3896HL_6CU1_003:HL_4WJ4_001 = 0.2954HL_6CU1_003:HL_4MGN_002 = 0.3608HL_6CU1_003:HL_8S95_001 = 0.2418HL_6CU1_003:HL_6CU1_003 = 0HL_6CU1_003:HL_4YCP_001 = 0.1353HL_6CU1_003:HL_4YCO_001 = 0.1891HL_6CU1_003:HL_8UO6_005 = 0.2549HL_6CU1_003:HL_8UO6_001 = 0.2679HL_6CU1_003:HL_6UGG_004 = 0.4242HL_4YCP_001:HL_7UZ0_001 = 0.4602HL_4YCP_001:HL_7E8O_001 = 0.4338HL_4YCP_001:HL_4WJ4_001 = 0.3184HL_4YCP_001:HL_4MGN_002 = 0.3842HL_4YCP_001:HL_8S95_001 = 0.241HL_4YCP_001:HL_6CU1_003 = 0.1353HL_4YCP_001:HL_4YCP_001 = 0HL_4YCP_001:HL_4YCO_001 = 0.1549HL_4YCP_001:HL_8UO6_005 = 0.2831HL_4YCP_001:HL_8UO6_001 = 0.3072HL_4YCP_001:HL_6UGG_004 = 0.4347HL_4YCO_001:HL_7UZ0_001 = 0.4115HL_4YCO_001:HL_7E8O_001 = 0.384HL_4YCO_001:HL_4WJ4_001 = 0.2971HL_4YCO_001:HL_4MGN_002 = 0.3516HL_4YCO_001:HL_8S95_001 = 0.2297HL_4YCO_001:HL_6CU1_003 = 0.1891HL_4YCO_001:HL_4YCP_001 = 0.1549HL_4YCO_001:HL_4YCO_001 = 0HL_4YCO_001:HL_8UO6_005 = 0.2397HL_4YCO_001:HL_8UO6_001 = 0.2517HL_4YCO_001:HL_6UGG_004 = 0.394HL_8UO6_005:HL_7UZ0_001 = 0.3361HL_8UO6_005:HL_7E8O_001 = 0.3345HL_8UO6_005:HL_4WJ4_001 = 0.2691HL_8UO6_005:HL_4MGN_002 = 0.2792HL_8UO6_005:HL_8S95_001 = 0.2223HL_8UO6_005:HL_6CU1_003 = 0.2549HL_8UO6_005:HL_4YCP_001 = 0.2831HL_8UO6_005:HL_4YCO_001 = 0.2397HL_8UO6_005:HL_8UO6_005 = 0HL_8UO6_005:HL_8UO6_001 = 0.0913HL_8UO6_005:HL_6UGG_004 = 0.3056HL_8UO6_001:HL_7UZ0_001 = 0.2917HL_8UO6_001:HL_7E8O_001 = 0.2903HL_8UO6_001:HL_4WJ4_001 = 0.2732HL_8UO6_001:HL_4MGN_002 = 0.3179HL_8UO6_001:HL_8S95_001 = 0.2601HL_8UO6_001:HL_6CU1_003 = 0.2679HL_8UO6_001:HL_4YCP_001 = 0.3072HL_8UO6_001:HL_4YCO_001 = 0.2517HL_8UO6_001:HL_8UO6_005 = 0.0913HL_8UO6_001:HL_8UO6_001 = 0HL_8UO6_001:HL_6UGG_004 = 0.303HL_6UGG_004:HL_7UZ0_001 = 0.7079HL_6UGG_004:HL_7E8O_001 = 0.6875HL_6UGG_004:HL_4WJ4_001 = 0.4219HL_6UGG_004:HL_4MGN_002 = 0.4486HL_6UGG_004:HL_8S95_001 = 0.3509HL_6UGG_004:HL_6CU1_003 = 0.4242HL_6UGG_004:HL_4YCP_001 = 0.4347HL_6UGG_004:HL_4YCO_001 = 0.394HL_6UGG_004:HL_8UO6_005 = 0.3056HL_6UGG_004:HL_8UO6_001 = 0.303HL_6UGG_004:HL_6UGG_004 = 0HL_7UZ0_001HL_7E8O_001HL_4WJ4_001HL_4MGN_002HL_8S95_001HL_6CU1_003HL_4YCP_001HL_4YCO_001HL_8UO6_005HL_8UO6_001HL_6UGG_004Discrepancy0.000.200.400.60
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