Motif HL_66948.1 Version HL_66948.1 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_005 | 4BPP | 0.0000 | 1 | A | C | 225 | A | 226 | G | 227 | A | 229 | A | 230 | U | 231 | G | 232 | cWW | ncWW |
| 2 | HL_4A1B_047 | 4A1B | 0.4455 | 1 | 1 | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCAAUG | 1 |
| ACGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCAAU | 1 |
| CGCAAU | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_66948.1 | Only in the parent motif |
|---|---|---|---|
| HL_77235.3 Compare | HL_4A1B_047 | HL_4BPP_005 | HL_1S72_049, HL_1QRS_002, HL_1S72_032 |
Children motifs
| Child motif | Common motif instances | Only in HL_66948.1 | Only in the child motif |
|---|---|---|---|
| HL_16728.1 Compare | HL_4BPP_005 | HL_4A1B_047 | HL_4A1B_033 |
| HL_16643.1 Compare | HL_4A1B_047 | HL_4BPP_005 | HL_4NVV_025, HL_1VW3_012 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.45 | Avg 0.22 | Max 0.45
Coloring options: