Motif HL_16643.1 Version HL_16643.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4NVV_025 | 4NVV | 0.9461 | 0 | A | 23S Ribosomal RNA | C | 932 | C | 933 | A | 934 | C | 935 | C | 936 | A | 937 | G | 938 | ||
| 2 | HL_1VW3_012 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | C | 505 | A | 506 | A | 507 | U | 508 | A | 509 | A | 510 | G | 511 | cWW | ntSH |
| 3 | HL_4A1B_047 | 4A1B | 0.8062 | 1 | 1 | 26S RRNA | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCACCAG | 1 |
| CAAUAAG | 1 |
| ACGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACCA | 1 |
| AAUAA | 1 |
| CGCAAU | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_16643.1 | Only in the parent motif |
|---|---|---|---|
| HL_66948.1 Compare | HL_4A1B_047 | HL_4NVV_025, HL_1VW3_012 | HL_4BPP_005 |
Children motifs
| Child motif | Common motif instances | Only in HL_16643.1 | Only in the child motif |
|---|---|---|---|
| HL_94189.1 Compare | HL_4A1B_047 | HL_4NVV_025, HL_1VW3_012 | HL_4BPP_005 |
| HL_95969.1 Compare | HL_1VW3_012 | HL_4A1B_047, HL_4NVV_025 | HL_4P8Z_002, HL_4P9R_003 |
| HL_64102.1 Compare | HL_4NVV_025 | HL_4A1B_047, HL_1VW3_012 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.81 | Avg 0.60 | Max 0.96
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