Motif HL_16728.1 Version HL_16728.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 2-8 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_033 | 4A1B | 0.0000 | 0 | 1 | A | 1593 | C | 1594 | A | 1595 | U | 1596 | U | 1597 | C | 1598 | G | 1599 | U | 1600 | cWW | ncWW | ncWW | ntSH |
| 2 | HL_4BPP_005 | 4BPP | 0.9502 | 0 | A | C | 225 | A | 226 | G | 227 | C | 228 | A | 229 | A | 230 | U | 231 | G | 232 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACAUUCGU | 1 |
| CAGCAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAUUCG | 1 |
| AGCAAU | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_16728.1 | Only in the parent motif |
|---|---|---|---|
| HL_36842.1 Compare | HL_4A1B_033 | HL_4BPP_005 | |
| HL_66948.1 Compare | HL_4BPP_005 | HL_4A1B_033 | HL_4A1B_047 |
Children motifs
| Child motif | Common motif instances | Only in HL_16728.1 | Only in the child motif |
|---|---|---|---|
| HL_94189.1 Compare | HL_4BPP_005 | HL_4A1B_033 | HL_4A1B_047 |
| HL_90541.1 Compare | HL_4A1B_033 | HL_4BPP_005 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.95 | Avg 0.48 | Max 0.95
Coloring options: