Motif HL_67216.4 Version HL_67216.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6
1	HL_4V88_217	4V88	0.6704	GNRA	A6	SSU rRNA	U	1396	U	1397	U	1398	C	1399	A	1400	A	1401	G	1402	cWW	ntSH
2	HL_4V9F_008	4V9F	0.2724		0	LSU rRNA	C	217	C	218	G	219	C	220	G	221	A	222	G	223	cWW	tSH
3	HL_5TBW_003	5TBW	0.1010		1	LSU rRNA	C	90	G	91	G	92	C	93	G	94	A	95	G	96	cWW	tSH
4	HL_4WF9_008	4WF9	0.1075		X	LSU rRNA	C	249	G	250	G	251	C	252	G	253	A	254	G	255	cWW	ntSH
5	HL_5J7L_141	5J7L	0.0854		DA	LSU rRNA	C	246	G	247	G	248	C	249	G	250	A	251	G	252	cWW	ntSH
6	HL_4Y4O_110	4Y4O	0.0000		2A	LSU rRNA	C	246	G	247	G	248	C	249	G	250	A	251	G	252	cWW	ntSH
7	HL_7A0S_008	7A0S	0.0851		X	LSU rRNA	C	223	G	224	G	225	C	226	G	227	A	228	G	229	cWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGCGAG	5
UUUCAAG	1
CCGCGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGCGA	5
UUCAA	1
CGCGA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
GNRA (1)
Basepair signature: cWW-tSH-R-R-R
Heat map statistics: Min 0.09 | Avg 0.26 | Max 0.67

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