Motif HL_67216.4 Version HL_67216.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_217 | 4V88 | 0.6704 | 0 | A6 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ntSH | |
| 2 | HL_4V9F_008 | 4V9F | 0.2724 | 0 | 0 | LSU rRNA | C | 217 | C | 218 | G | 219 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH | |
| 3 | HL_5TBW_003 | 5TBW | 0.1010 | 0 | 1 | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH | |
| 4 | HL_4WF9_008 | 4WF9 | 0.1075 | 0 | X | LSU rRNA | C | 249 | G | 250 | G | 251 | C | 252 | G | 253 | A | 254 | G | 255 | cWW | ntSH | |
| 5 | HL_5J7L_141 | 5J7L | 0.0854 | 0 | DA | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | |
| 6 | HL_4Y4O_110 | 4Y4O | 0.0000 | 0 | 2A | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | |
| 7 | HL_7A0S_008 | 7A0S | 0.0851 | 0 | X | LSU rRNA | C | 223 | G | 224 | G | 225 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGAG | 5 |
| UUUCAAG | 1 |
| CCGCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGA | 5 |
| UUCAA | 1 |
| CGCGA | 1 |
- Annotations
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.26 | Max 0.67
Coloring options: