Motif HL_67265.4 Version HL_67265.4 of this group appears in releases 3.18 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_001 | 5J7L | 0.1037 | 1 | AA | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | ||
| 2 | HL_4LFB_001 | 4LFB | 0.0000 | 1 | A | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | ||
| 3 | HL_6CZR_072 | 6CZR | 0.1571 | 1 | 1a | SSU rRNA | U | 13 | U | 14 | G | 16 | A | 17 | U | 18 | C | 19 | C | 20 | U | 21 | G | 22 | G | 23 | cWW | tHW | ||
| 4 | HL_4V88_186 | 4V88 | 0.2575 | 1 | A6 | SSU rRNA | G | 7 | U | 8 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | ||
| 5 | HL_5X6B_002 | 5X6B | 0.6553 | 1 | P | tRNA | G | 29 | A | 30 | U | 32 | G | 33 | C | 34 | A | 35 | G | 36 | A | 37 | U | 38 | C | 39 | cWW | ncWW | ||
| 6 | HL_5BTP_004 | 5BTP | 0.7464 | 1 | B | RNA (62-MER) | C | 62 | G | 63 | C | 65 | C | 66 | G | 67 | U | 68 | C | 69 | U | 70 | G | 71 | G | 72 | cWW | |||
| 7 | HL_4ZNP_002 | 4ZNP | 0.7300 | 1 | A | pfI Riboswitch | C | 58 | G | 59 | C | 61 | C | 62 | G | 63 | C | 64 | C | 65 | U | 66 | G | 67 | G | 68 | cWW | |||
| 8 | HL_4XWF_002 | 4XWF | 0.6375 | 1 | A | ZMP/ZTP riboswitch | C | 50 | G | 51 | C | 53 | C | 54 | G | 55 | C | 56 | C | 57 | U | 58 | G | 59 | G | 60 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGAUCCUGG | 2 |
| UUUGAUCAUGG | 1 |
| GUUGAUCCUGC | 1 |
| GACUGCAGAUC | 1 |
| CGACCGUCUGG | 1 |
| CGACCGCCUGG | 1 |
| CGCCCGCCUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 3 |
| UUGAUCAUG | 1 |
| ACUGCAGAU | 1 |
| GACCGUCUG | 1 |
| GACCGCCUG | 1 |
| GCCCGCCUG | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-tHW-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.45 | Max 0.76
Coloring options: