Motif HL_67407.2 Version HL_67407.2 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	6-7
1	HL_6WZR_002	6WZR	0.4170	1	A	ZMP/ZTP riboswitch	C	62	G	63	C	65	C	66	G	67	U	68	C	69	U	70	G	71	G	72	cWW
2	HL_5BTP_004	5BTP	0.4030	1	B	ZMP/ZTP riboswitch	C	62	G	63	C	65	C	66	G	67	U	68	C	69	U	70	G	71	G	72	cWW
3	HL_9BZC_003	9BZC	0.0000	1	A	RNA (87-MER)	C	77	G	78	C	80	C	81	G	82	U	83	C	84	U	85	G	86	G	87	cWW
4	HL_4XWF_002	4XWF	0.1542	1	A	ZMP/ZTP riboswitch	C	50	G	51	C	53	C	54	G	55	C	56	C	57	U	58	G	59	G	60	cWW
5	HL_4ZNP_002	4ZNP	0.2023	1	A	ZMP/ZTP riboswitch	C	58	G	59	C	61	C	62	G	63	C	64	C	65	U	66	G	67	G	68	cWW
6	HL_4PJO_001	4PJO	0.3238	1	1	U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4.	G	17	A	18	G	20	U	21	G	22	C	23	A	24	C	25	A	26	C	27	cWW	ntWW
7	HL_7JRS_002	7JRS	0.4331	1	B	RNA 3D nanocage	G	63	A	64	G	66	C	67	A	68	G	69	G	70	C	71	A	72	C	73	cWW	ncwW
8	HL_7JRS_004	7JRS	0.7701	1	A	RNA 3D nanocage	G	63	A	64	G	66	C	67	A	68	G	69	G	70	C	71	A	72	C	73	ncWW	tWW
9	HL_7A0S_002	7A0S	0.7321	1	X	LSU rRNA	C	85	U	86	G	88	A	89	G	90	A	91	U	92	A	93	C	94	G	95	cWW	ncWW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGACCGUCUGG	3
GAAGCAGGCAC	2
CGCCCGCCUGG	1
CGACCGCCUGG	1
GAGGUGCACAC	1
CUGGAGAUACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GACCGUCUG	3
AAGCAGGCA	2
GCCCGCCUG	1
GACCGCCUG	1
AGGUGCACA	1
UGGAGAUAC	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.13 | Avg 0.51 | Max 0.81

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Coloring options: Nucleotide numbers

Motif HL_67407.2 Version HL_67407.2 of this group appears in releases 3.91 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_67407.2 Version HL_67407.2 of this group appears in releases 3.91 to 3.94

Download

Csv

Json