Motif HL_67719.1 Version HL_67719.1 of this group appears in releases 3.58 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6JXM_002 | 6JXM | 0.7914 | 2 | tRNA anticodon loop | B | tRNA | G | 41 | A | 44 | A | 45 | A | 46 | A | 47 | C | 48 | cWW |
| 2 | HL_4GXY_003 | 4GXY | 0.4234 | 1 | Pseudoknot geometry | A | Cobalamin riboswitch | G | 65 | C | 67 | C | 68 | C | 69 | G | 70 | C | 71 | cWW |
| 3 | HL_6UFM_005 | 6UFM | 0.3235 | 0 | Pseudoknot geometry | B | RNA (98-MER) | G | 50 | G | 51 | A | 52 | A | 53 | A | 54 | C | 55 | cWW |
| 4 | HL_5TBW_066 | 5TBW | 0.2605 | 0 | Ribsomal LSU H95 | 1 | LSU rRNA | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW |
| 5 | HL_4V9F_067 | 4V9F | 0.2374 | 0 | Ribsomal LSU H95 | 0 | LSU rRNA | C | 2737 | G | 2738 | A | 2739 | G | 2740 | A | 2741 | G | 2742 | cWW |
| 6 | HL_7A0S_064 | 7A0S | 0.0000 | 0 | Ribsomal LSU H95 | X | LSU rRNA | U | 2680 | A | 2681 | C | 2682 | C | 2683 | A | 2684 | A | 2685 | cWW |
| 7 | HL_5J7L_198 | 5J7L | 0.0991 | 0 | Ribsomal LSU H95 | DA | LSU rRNA | U | 2701 | G | 2702 | C | 2703 | C | 2704 | A | 2705 | A | 2706 | cWW |
| 8 | HL_4WF9_061 | 4WF9 | 0.1469 | 0 | Ribsomal LSU H95 | X | LSU rRNA | U | 2728 | G | 2729 | C | 2730 | C | 2731 | A | 2732 | A | 2733 | cWW |
| 9 | HL_1U6B_002 | 1U6B | 0.5269 | 0 | Pseudoknot geometry | B | 197-MER | C | 70 | G | 71 | C | 72 | C | 73 | C | 74 | G | 75 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCCAA | 2 |
| GCUAAAAC | 1 |
| GUCCCGC | 1 |
| GGAAAC | 1 |
| UGAUCA | 1 |
| CGAGAG | 1 |
| UACCAA | 1 |
| CGCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCA | 2 |
| CUAAAA | 1 |
| UCCCG | 1 |
| GAAA | 1 |
| GAUC | 1 |
| GAGA | 1 |
| ACCA | 1 |
| GCCC | 1 |
Release history
| Release | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Ribsomal LSU H95 (5)
- Pseudoknot geometry (3)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.39 | Max 0.95
Coloring options: