Motif HL_68304.4 Version HL_68304.4 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_3KTW_001	3KTW	0.8956	0	GNRA	C	SRP RNA	U	163	G	164	G	165	A	166	G	167	G	168	cWW
2	HL_4WF9_031	4WF9	0.7835	0	GNRA	X	LSU rRNA	C	1260	G	1261	U	1262	A	1263	A	1264	G	1265	cWW
3	HL_4LFB_012	4LFB	0.3130	1	GNRA	A	SSU rRNA	C	458	G	459	A	460	G	462	A	463	G	474	cWW	tSH
4	HL_5J7L_148	5J7L	0.0000	1	GNRA	DA	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW	tSH
5	HL_6ASO_001	6ASO	0.2255	1	GNRA	I	U6 snRNA	U	70	G	71	C	72	U	74	A	75	A	76	ncWW	tSH
6	HL_5J7L_026	5J7L	0.4789	1	GNRA	AA	SSU rRNA	U	1165	G	1166	A	1167	A	1169	A	1170	A	1171	cWW	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGAGG	1
CGUAAG	1
CGACGAG	1
CGGCGAG	1
UGCAUAA	1
UGAUAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGAG	1
GUAA	1
GACGA	1
GGCGA	1
GCAUA	1
GAUAA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (6)
Basepair signature: cWW-tSH-R-R
Heat map statistics: Min 0.23 | Avg 0.53 | Max 0.94

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Coloring options: Nucleotide numbers

Motif HL_68304.4 Version HL_68304.4 of this group appears in releases 3.12 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_68304.4 Version HL_68304.4 of this group appears in releases 3.12 to 3.17

Download

Csv

Json