Motif HL_69353.2 Version HL_69353.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_037 | 4WF9 | 0.4374 | 1 | Mini UNCG | X | C | 1612 | A | 1614 | G | 1615 | cWW |
| 2 | HL_4V8P_122 | 4V8P | 0.2771 | 2 | D1 | C | 1818 | U | 1821 | G | 1822 | cWW | |
| 3 | HL_5TBW_040 | 5TBW | 0.1523 | 2 | Mini UNCG | 1 | C | 1792 | U | 1795 | G | 1796 | cWW |
| 4 | HL_4IOA_038 | 4IOA | 0.1588 | 1 | Mini UNCG (H) | X | C | 1581 | A | 1583 | G | 1584 | cWW |
| 5 | HL_4Y4O_141 | 4Y4O | 0.1017 | 1 | 2A | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 6 | HL_5J7L_172 | 5J7L | 0.1048 | 1 | Mini UNCG | DA | C | 1565 | G | 1567 | G | 1568 | cWW |
| 7 | HL_5FQ5_002 | 5FQ5 | 0.0875 | 1 | Mini UNCG | A | C | 55 | A | 57 | G | 58 | cWW |
| 8 | HL_5B2T_002 | 5B2T | 0.0497 | 1 | Mini UNCG | A | C | 55 | A | 57 | G | 58 | cWW |
| 9 | HL_4ZT0_005 | 4ZT0 | 0.0000 | 1 | Mini UNCG | D | C | 55 | A | 57 | G | 58 | cWW |
| 10 | HL_2F8K_001 | 2F8K | 0.0995 | 1 | Mini UNCG | B | U | 6 | G | 8 | A | 9 | cWW |
| 11 | HL_5U30_001 | 5U30 | 0.1500 | 1 | Mini UNCG | B | U | 4 | G | 6 | A | 7 | cWW |
| 12 | HL_5F9R_002 | 5F9R | 0.1675 | 1 | Mini UNCG | A | C | 73 | A | 75 | G | 76 | cWW |
| 13 | HL_4V88_192 | 4V88 | 0.2488 | 1 | Mini UNCG | A6 | C | 276 | U | 278 | G | 279 | cWW |
| 14 | HL_5SWD_005 | 5SWD | 0.2610 | 3 | Mini UNCG | B | U | 47 | C | 50 | A | 52 | cWW |
| 15 | HL_4V9F_041 | 4V9F | 0.2186 | 2 | Mini UNCG | 0 | C | 1651 | U | 1654 | G | 1655 | cWW |
| 16 | HL_5TBW_071 | 5TBW | 0.2284 | 1 | Mini UNCG | 1 | C | 3350 | U | 3352 | G | 3353 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG | 4 |
| CAAG | 2 |
| CUUG | 2 |
| CGAG | 1 |
| CCUUG | 1 |
| CCGUG | 1 |
| CAGG | 1 |
| UUGA | 1 |
| UAGA | 1 |
| UUUCUA | 1 |
| CCAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA | 4 |
| AA | 2 |
| AG | 2 |
| UU | 2 |
| GA | 1 |
| CUU | 1 |
| CGU | 1 |
| UG | 1 |
| UUCU | 1 |
| CAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG (13)
- (2)
- Mini UNCG (H) (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.04 | Avg 0.22 | Max 0.55
Coloring options: