Motif HL_69774.1 Version HL_69774.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3IGI_009 | 3IGI | 0.5418 | 1 | Other HL | A | Group IIC intron | C | 368 | G | 369 | A | 371 | C | 372 | G | 373 | cWW | tSW |
| 2 | HL_4KZD_001 | 4KZD | 0.0000 | 2 | Fab BL3-6 binding hairpin with tSW | R | RNA (84-MER) | G | 37 | A | 39 | C | 41 | A | 42 | C | 43 | cWW | tSW |
| 3 | HL_3IVK_003 | 3IVK | 0.0812 | 2 | Fab BL3-6 binding hairpin with tSW | M | class I ligase product | G | 59 | A | 61 | C | 63 | A | 64 | C | 65 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAC | 2 |
| CGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACA | 2 |
| GAAC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Fab BL3-6 binding hairpin with tSW (2)
- Other HL (1)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.08 | Avg 0.27 | Max 0.59
Coloring options: