Motif HL_70052.1 Version HL_70052.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DU5_001 | 6DU5 | 0.0000 | 4 | B | hp6-RNA (25-MER) | U | 7 | G | 8 | U | 9 | A | 13 | C | 14 | G | 16 | A | 17 | G | 18 | A | 19 | A | 20 | G | 21 | cWW | tSH | ntWW |
| 2 | HL_6DU4_001 | 6DU4 | 0.1704 | 6 | B | hp1x-RNA (29-MER) | C | 7 | G | 8 | U | 9 | A | 15 | C | 16 | G | 18 | A | 19 | G | 20 | A | 21 | A | 22 | G | 23 | cWW | tSH | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUGGUACAGAGAAG | 1 |
| CGUAGGCUACAGAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGGUACAGAGAA | 1 |
| GUAGGCUACAGAGAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tWW-F-F-F-F-F
- Heat map statistics
- Min 0.17 | Avg 0.09 | Max 0.17
Coloring options: