Motif HL_70546.2 Version HL_70546.2 of this group appears in releases 3.87 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4KR9_002 | 4KR9 | 0.2430 | 3 | M | RNA (39-MER) | G | 19 | G | 20 | C | 24 | cWW | |
2 | HL_6D12_001 | 6D12 | 0.1542 | 4 | C | human 7SK RNA stem-loop 4 | C | 309 | A | 310 | G | 315 | cWW | |
3 | HL_2OEU_002 | 2OEU | 0.2347 | 5 | A | Hammerhead Ribozyme | C | 25 | C | 26 | G | 32 | cWW | |
4 | HL_4V9F_011 | 4V9F | 0.2702 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW | |
5 | HL_7A0S_011 | 7A0S | 0.3303 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW | |
6 | HL_7A0S_003 | 7A0S | 0.3416 | 3 | X | LSU rRNA | G | 121 | G | 122 | C | 126 | cWW | |
7 | HL_8VTW_003 | 8VTW | 0.2431 | 3 | 1A | LSU rRNA | G | 123 | G | 124 | C | 128 | cWW | |
8 | HL_5J7L_136 | 5J7L | 0.1951 | 3 | DA | LSU rRNA | G | 123 | G | 124 | C | 128 | cWW | |
9 | HL_4WF9_003 | 4WF9 | 0.1691 | 3 | X | LSU rRNA | G | 122 | G | 123 | C | 127 | cWW | |
10 | HL_2BH2_002 | 2BH2 | 0.3223 | 6 | D | 23S RIBOSOMAL RNA 1932-1968 | G | 1949 | G | 1950 | C | 1957 | cWW | |
11 | HL_4WF9_011 | 4WF9 | 0.3040 | 2 | X | LSU rRNA | C | 362 | A | 363 | G | 366 | cWW | |
12 | HL_8VTW_010 | 8VTW | 0.2762 | 2 | 1A | LSU rRNA | C | 319 | A | 320 | G | 323 | cWW | |
13 | HL_5J7L_143 | 5J7L | 0.2914 | 2 | DA | LSU rRNA | G | 319 | A | 320 | C | 323 | cWW | |
14 | HL_4XWF_001 | 4XWF | 0.2456 | 3 | A | ZMP/ZTP riboswitch | G | 24 | G | 25 | C | 29 | cWW | |
15 | HL_3ADD_003 | 3ADD | 0.1539 | 3 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | G | 47|||I | cWW | |
16 | HL_1WZ2_007 | 1WZ2 | 0.0000 | 3 | D | tRNA | C | 950 | G | 951 | G | 955 | cWW | |
17 | HL_2QUS_003 | 2QUS | 0.0835 | 3 | A | Hammerhead ribozyme | C | 42 | G | 43 | G | 47 | cWW | |
18 | HL_2QUW_003 | 2QUW | 0.0984 | 3 | B | Hammerhead ribozyme, cleaved fragment | C | 42 | G | 43 | G | 47 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAAAC | 5 |
GAUAC | 2 |
CGUGAG | 2 |
CAUGUGG | 1 |
CCAAAUAG | 1 |
CUCAG | 1 |
GGGAAC | 1 |
GGUAAGUUC | 1 |
CAAAG | 1 |
CAGAG | 1 |
CGAGUG | 1 |
CGUAGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAA | 5 |
AUA | 2 |
GUGA | 2 |
AUGUG | 1 |
CAAAUA | 1 |
UCA | 1 |
GGAA | 1 |
GUAAGUU | 1 |
AAA | 1 |
AGA | 1 |
GAGU | 1 |
GUAG | 1 |
Release history
Release | 3.87 |
---|---|
Date | 2024-08-14 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: