#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_4KR9_0024KR90.24303 MRNA (39-MER)G19G20C24cWW
2 HL_6D12_0016D120.15424 Chuman 7SK RNA stem-loop 4C309A310G315cWW
3 HL_2OEU_0022OEU0.23475 AHammerhead RibozymeC25C26G32cWW
4 HL_4V9F_0114V9F0.27022 0 LSU rRNAG326A327C330cWW
5 HL_7A0S_0117A0S0.33032 X LSU rRNAC330U331G334cWW
6 HL_7A0S_0037A0S0.34163 X LSU rRNAG121G122C126cWW
7 HL_8VTW_0038VTW0.24313 1A LSU rRNAG123G124C128cWW
8 HL_5J7L_1365J7L0.19513 DA LSU rRNAG123G124C128cWW
9 HL_4WF9_0034WF90.16913 X LSU rRNAG122G123C127cWW
10 HL_2BH2_0022BH20.32236 D23S RIBOSOMAL RNA 1932-1968G1949G1950C1957cWW
11 HL_4WF9_0114WF90.30402 X LSU rRNAC362A363G366cWW
12 HL_8VTW_0108VTW0.27622 1A LSU rRNAC319A320G323cWW
13 HL_5J7L_1435J7L0.29142 DA LSU rRNAG319A320C323cWW
14 HL_4XWF_0014XWF0.24563 AZMP/ZTP riboswitchG24G25C29cWW
15 HL_3ADD_0033ADD0.15393 CSelenocysteine transfer RNAC47|||DG47|||EG47|||IcWW
16 HL_1WZ2_0071WZ20.00003 DtRNAC950G951G955cWW
17 HL_2QUS_0032QUS0.08353 AHammerhead ribozymeC42G43G47cWW
18 HL_2QUW_0032QUW0.09843 BHammerhead ribozyme, cleaved fragmentC42G43G47cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAAAC5
GAUAC2
CGUGAG2
CAUGUGG1
CCAAAUAG1
CUCAG1
GGGAAC1
GGUAAGUUC1
CAAAG1
CAGAG1
CGAGUG1
CGUAGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA5
AUA2
GUGA2
AUGUG1
CAAAUA1
UCA1
GGAA1
GUAAGUU1
AAA1
AGA1
GAGU1
GUAG1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-F
Heat map statistics
Min 0.06 | Avg 0.32 | Max 0.92
Help

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