#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 31-3
1 HL_4KR9_0024KR90.24303MRNA (39-MER)G19G20C24cWW
2 HL_6D12_0016D120.15424Chuman 7SK RNA stem-loop 4C309A310G315cWW
3 HL_2OEU_0022OEU0.23475AHammerhead RibozymeC25C26G32cWW
4 HL_4V9F_0114V9F0.270220 LSU rRNAG326A327C330cWW
5 HL_7A0S_0117A0S0.33032X LSU rRNAC330U331G334cWW
6 HL_7A0S_0037A0S0.34163X LSU rRNAG121G122C126cWW
7 HL_8VTW_0038VTW0.243131A LSU rRNAG123G124C128cWW
8 HL_5J7L_1365J7L0.19513DA LSU rRNAG123G124C128cWW
9 HL_4WF9_0034WF90.16913X LSU rRNAG122G123C127cWW
10 HL_2BH2_0022BH20.32236D23S RIBOSOMAL RNA 1932-1968G1949G1950C1957cWW
11 HL_4WF9_0114WF90.30402X LSU rRNAC362A363G366cWW
12 HL_8VTW_0108VTW0.276221A LSU rRNAC319A320G323cWW
13 HL_5J7L_1435J7L0.29142DA LSU rRNAG319A320C323cWW
14 HL_4XWF_0014XWF0.24563AZMP/ZTP riboswitchG24G25C29cWW
15 HL_3ADD_0033ADD0.15393CSelenocysteine transfer RNAC47|||DG47|||EG47|||IcWW
16 HL_1WZ2_0071WZ20.00003DtRNAC950G951G955cWW
17 HL_2QUS_0032QUS0.08353AHammerhead ribozymeC42G43G47cWW
18 HL_2QUW_0032QUW0.09843BHammerhead ribozyme, cleaved fragmentC42G43G47cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAAAC5
GAUAC2
CGUGAG2
CAUGUGG1
CCAAAUAG1
CUCAG1
GGGAAC1
GGUAAGUUC1
CAAAG1
CAGAG1
CGAGUG1
CGUAGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA5
AUA2
GUGA2
AUGUG1
CAAAUA1
UCA1
GGAA1
GUAAGUU1
AAA1
AGA1
GAGU1
GUAG1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (18)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.06 | Avg 0.32 | Max 0.92
    Help

    Coloring options:

    HL_4KR9_002:HL_4KR9_002 = 0HL_4KR9_002:HL_6D12_001 = 0.3585HL_4KR9_002:HL_2OEU_002 = 0.7111HL_4KR9_002:HL_4V9F_011 = 0.3605HL_4KR9_002:HL_7A0S_011 = 0.433HL_4KR9_002:HL_7A0S_003 = 0.7712HL_4KR9_002:HL_8VTW_003 = 0.7622HL_4KR9_002:HL_5J7L_136 = 0.7486HL_4KR9_002:HL_4WF9_003 = 0.2991HL_4KR9_002:HL_2BH2_002 = 0.9041HL_4KR9_002:HL_4WF9_011 = 0.3942HL_4KR9_002:HL_8VTW_010 = 0.3911HL_4KR9_002:HL_5J7L_143 = 0.4187HL_4KR9_002:HL_4XWF_001 = 0.6006HL_4KR9_002:HL_3ADD_003 = 0.6164HL_4KR9_002:HL_1WZ2_007 = 0.243HL_4KR9_002:HL_2QUS_003 = 0.6643HL_4KR9_002:HL_2QUW_003 = 0.6438HL_6D12_001:HL_4KR9_002 = 0.3585HL_6D12_001:HL_6D12_001 = 0HL_6D12_001:HL_2OEU_002 = 0.1701HL_6D12_001:HL_4V9F_011 = 0.2424HL_6D12_001:HL_7A0S_011 = 0.3053HL_6D12_001:HL_7A0S_003 = 0.7849HL_6D12_001:HL_8VTW_003 = 0.7969HL_6D12_001:HL_5J7L_136 = 0.7667HL_6D12_001:HL_4WF9_003 = 0.1929HL_6D12_001:HL_2BH2_002 = 0.4054HL_6D12_001:HL_4WF9_011 = 0.2954HL_6D12_001:HL_8VTW_010 = 0.2606HL_6D12_001:HL_5J7L_143 = 0.2794HL_6D12_001:HL_4XWF_001 = 0.3416HL_6D12_001:HL_3ADD_003 = 0.2958HL_6D12_001:HL_1WZ2_007 = 0.1542HL_6D12_001:HL_2QUS_003 = 0.4611HL_6D12_001:HL_2QUW_003 = 0.4541HL_2OEU_002:HL_4KR9_002 = 0.7111HL_2OEU_002:HL_6D12_001 = 0.1701HL_2OEU_002:HL_2OEU_002 = 0HL_2OEU_002:HL_4V9F_011 = 0.2008HL_2OEU_002:HL_7A0S_011 = 0.2748HL_2OEU_002:HL_7A0S_003 = 0.5341HL_2OEU_002:HL_8VTW_003 = 0.555HL_2OEU_002:HL_5J7L_136 = 0.5084HL_2OEU_002:HL_4WF9_003 = 0.2455HL_2OEU_002:HL_2BH2_002 = 0.8224HL_2OEU_002:HL_4WF9_011 = 0.2324HL_2OEU_002:HL_8VTW_010 = 0.2324HL_2OEU_002:HL_5J7L_143 = 0.2737HL_2OEU_002:HL_4XWF_001 = 0.4329HL_2OEU_002:HL_3ADD_003 = 0.4721HL_2OEU_002:HL_1WZ2_007 = 0.2347HL_2OEU_002:HL_2QUS_003 = 0.6046HL_2OEU_002:HL_2QUW_003 = 0.5997HL_4V9F_011:HL_4KR9_002 = 0.3605HL_4V9F_011:HL_6D12_001 = 0.2424HL_4V9F_011:HL_2OEU_002 = 0.2008HL_4V9F_011:HL_4V9F_011 = 0HL_4V9F_011:HL_7A0S_011 = 0.1013HL_4V9F_011:HL_7A0S_003 = 0.135HL_4V9F_011:HL_8VTW_003 = 0.1836HL_4V9F_011:HL_5J7L_136 = 0.1645HL_4V9F_011:HL_4WF9_003 = 0.1822HL_4V9F_011:HL_2BH2_002 = 0.1705HL_4V9F_011:HL_4WF9_011 = 0.1224HL_4V9F_011:HL_8VTW_010 = 0.1028HL_4V9F_011:HL_5J7L_143 = 0.1117HL_4V9F_011:HL_4XWF_001 = 0.1809HL_4V9F_011:HL_3ADD_003 = 0.2288HL_4V9F_011:HL_1WZ2_007 = 0.2702HL_4V9F_011:HL_2QUS_003 = 0.298HL_4V9F_011:HL_2QUW_003 = 0.3065HL_7A0S_011:HL_4KR9_002 = 0.433HL_7A0S_011:HL_6D12_001 = 0.3053HL_7A0S_011:HL_2OEU_002 = 0.2748HL_7A0S_011:HL_4V9F_011 = 0.1013HL_7A0S_011:HL_7A0S_011 = 0HL_7A0S_011:HL_7A0S_003 = 0.0991HL_7A0S_011:HL_8VTW_003 = 0.2059HL_7A0S_011:HL_5J7L_136 = 0.2145HL_7A0S_011:HL_4WF9_003 = 0.2221HL_7A0S_011:HL_2BH2_002 = 0.1429HL_7A0S_011:HL_4WF9_011 = 0.1442HL_7A0S_011:HL_8VTW_010 = 0.1219HL_7A0S_011:HL_5J7L_143 = 0.1071HL_7A0S_011:HL_4XWF_001 = 0.1976HL_7A0S_011:HL_3ADD_003 = 0.2643HL_7A0S_011:HL_1WZ2_007 = 0.3303HL_7A0S_011:HL_2QUS_003 = 0.3613HL_7A0S_011:HL_2QUW_003 = 0.3741HL_7A0S_003:HL_4KR9_002 = 0.7712HL_7A0S_003:HL_6D12_001 = 0.7849HL_7A0S_003:HL_2OEU_002 = 0.5341HL_7A0S_003:HL_4V9F_011 = 0.135HL_7A0S_003:HL_7A0S_011 = 0.0991HL_7A0S_003:HL_7A0S_003 = 0HL_7A0S_003:HL_8VTW_003 = 0.136HL_7A0S_003:HL_5J7L_136 = 0.1578HL_7A0S_003:HL_4WF9_003 = 0.2021HL_7A0S_003:HL_2BH2_002 = 0.6851HL_7A0S_003:HL_4WF9_011 = 0.136HL_7A0S_003:HL_8VTW_010 = 0.1296HL_7A0S_003:HL_5J7L_143 = 0.0864HL_7A0S_003:HL_4XWF_001 = 0.3883HL_7A0S_003:HL_3ADD_003 = 0.4171HL_7A0S_003:HL_1WZ2_007 = 0.3416HL_7A0S_003:HL_2QUS_003 = 0.7093HL_7A0S_003:HL_2QUW_003 = 0.7128HL_8VTW_003:HL_4KR9_002 = 0.7622HL_8VTW_003:HL_6D12_001 = 0.7969HL_8VTW_003:HL_2OEU_002 = 0.555HL_8VTW_003:HL_4V9F_011 = 0.1836HL_8VTW_003:HL_7A0S_011 = 0.2059HL_8VTW_003:HL_7A0S_003 = 0.136HL_8VTW_003:HL_8VTW_003 = 0HL_8VTW_003:HL_5J7L_136 = 0.0973HL_8VTW_003:HL_4WF9_003 = 0.0972HL_8VTW_003:HL_2BH2_002 = 0.6784HL_8VTW_003:HL_4WF9_011 = 0.1694HL_8VTW_003:HL_8VTW_010 = 0.1702HL_8VTW_003:HL_5J7L_143 = 0.1503HL_8VTW_003:HL_4XWF_001 = 0.3852HL_8VTW_003:HL_3ADD_003 = 0.397HL_8VTW_003:HL_1WZ2_007 = 0.2431HL_8VTW_003:HL_2QUS_003 = 0.7193HL_8VTW_003:HL_2QUW_003 = 0.7227HL_5J7L_136:HL_4KR9_002 = 0.7486HL_5J7L_136:HL_6D12_001 = 0.7667HL_5J7L_136:HL_2OEU_002 = 0.5084HL_5J7L_136:HL_4V9F_011 = 0.1645HL_5J7L_136:HL_7A0S_011 = 0.2145HL_5J7L_136:HL_7A0S_003 = 0.1578HL_5J7L_136:HL_8VTW_003 = 0.0973HL_5J7L_136:HL_5J7L_136 = 0HL_5J7L_136:HL_4WF9_003 = 0.0773HL_5J7L_136:HL_2BH2_002 = 0.7069HL_5J7L_136:HL_4WF9_011 = 0.164HL_5J7L_136:HL_8VTW_010 = 0.1591HL_5J7L_136:HL_5J7L_143 = 0.1588HL_5J7L_136:HL_4XWF_001 = 0.3378HL_5J7L_136:HL_3ADD_003 = 0.3775HL_5J7L_136:HL_1WZ2_007 = 0.1951HL_5J7L_136:HL_2QUS_003 = 0.6903HL_5J7L_136:HL_2QUW_003 = 0.6936HL_4WF9_003:HL_4KR9_002 = 0.2991HL_4WF9_003:HL_6D12_001 = 0.1929HL_4WF9_003:HL_2OEU_002 = 0.2455HL_4WF9_003:HL_4V9F_011 = 0.1822HL_4WF9_003:HL_7A0S_011 = 0.2221HL_4WF9_003:HL_7A0S_003 = 0.2021HL_4WF9_003:HL_8VTW_003 = 0.0972HL_4WF9_003:HL_5J7L_136 = 0.0773HL_4WF9_003:HL_4WF9_003 = 0HL_4WF9_003:HL_2BH2_002 = 0.1684HL_4WF9_003:HL_4WF9_011 = 0.1909HL_4WF9_003:HL_8VTW_010 = 0.1764HL_4WF9_003:HL_5J7L_143 = 0.1666HL_4WF9_003:HL_4XWF_001 = 0.1183HL_4WF9_003:HL_3ADD_003 = 0.1691HL_4WF9_003:HL_1WZ2_007 = 0.1691HL_4WF9_003:HL_2QUS_003 = 0.1993HL_4WF9_003:HL_2QUW_003 = 0.2242HL_2BH2_002:HL_4KR9_002 = 0.9041HL_2BH2_002:HL_6D12_001 = 0.4054HL_2BH2_002:HL_2OEU_002 = 0.8224HL_2BH2_002:HL_4V9F_011 = 0.1705HL_2BH2_002:HL_7A0S_011 = 0.1429HL_2BH2_002:HL_7A0S_003 = 0.6851HL_2BH2_002:HL_8VTW_003 = 0.6784HL_2BH2_002:HL_5J7L_136 = 0.7069HL_2BH2_002:HL_4WF9_003 = 0.1684HL_2BH2_002:HL_2BH2_002 = 0HL_2BH2_002:HL_4WF9_011 = 0.1505HL_2BH2_002:HL_8VTW_010 = 0.1617HL_2BH2_002:HL_5J7L_143 = 0.1247HL_2BH2_002:HL_4XWF_001 = 0.7122HL_2BH2_002:HL_3ADD_003 = 0.738HL_2BH2_002:HL_1WZ2_007 = 0.3223HL_2BH2_002:HL_2QUS_003 = 0.9211HL_2BH2_002:HL_2QUW_003 = 0.9234HL_4WF9_011:HL_4KR9_002 = 0.3942HL_4WF9_011:HL_6D12_001 = 0.2954HL_4WF9_011:HL_2OEU_002 = 0.2324HL_4WF9_011:HL_4V9F_011 = 0.1224HL_4WF9_011:HL_7A0S_011 = 0.1442HL_4WF9_011:HL_7A0S_003 = 0.136HL_4WF9_011:HL_8VTW_003 = 0.1694HL_4WF9_011:HL_5J7L_136 = 0.164HL_4WF9_011:HL_4WF9_003 = 0.1909HL_4WF9_011:HL_2BH2_002 = 0.1505HL_4WF9_011:HL_4WF9_011 = 0HL_4WF9_011:HL_8VTW_010 = 0.0817HL_4WF9_011:HL_5J7L_143 = 0.1165HL_4WF9_011:HL_4XWF_001 = 0.203HL_4WF9_011:HL_3ADD_003 = 0.2948HL_4WF9_011:HL_1WZ2_007 = 0.304HL_4WF9_011:HL_2QUS_003 = 0.3236HL_4WF9_011:HL_2QUW_003 = 0.3478HL_8VTW_010:HL_4KR9_002 = 0.3911HL_8VTW_010:HL_6D12_001 = 0.2606HL_8VTW_010:HL_2OEU_002 = 0.2324HL_8VTW_010:HL_4V9F_011 = 0.1028HL_8VTW_010:HL_7A0S_011 = 0.1219HL_8VTW_010:HL_7A0S_003 = 0.1296HL_8VTW_010:HL_8VTW_003 = 0.1702HL_8VTW_010:HL_5J7L_136 = 0.1591HL_8VTW_010:HL_4WF9_003 = 0.1764HL_8VTW_010:HL_2BH2_002 = 0.1617HL_8VTW_010:HL_4WF9_011 = 0.0817HL_8VTW_010:HL_8VTW_010 = 0HL_8VTW_010:HL_5J7L_143 = 0.0754HL_8VTW_010:HL_4XWF_001 = 0.1677HL_8VTW_010:HL_3ADD_003 = 0.243HL_8VTW_010:HL_1WZ2_007 = 0.2762HL_8VTW_010:HL_2QUS_003 = 0.2991HL_8VTW_010:HL_2QUW_003 = 0.3231HL_5J7L_143:HL_4KR9_002 = 0.4187HL_5J7L_143:HL_6D12_001 = 0.2794HL_5J7L_143:HL_2OEU_002 = 0.2737HL_5J7L_143:HL_4V9F_011 = 0.1117HL_5J7L_143:HL_7A0S_011 = 0.1071HL_5J7L_143:HL_7A0S_003 = 0.0864HL_5J7L_143:HL_8VTW_003 = 0.1503HL_5J7L_143:HL_5J7L_136 = 0.1588HL_5J7L_143:HL_4WF9_003 = 0.1666HL_5J7L_143:HL_2BH2_002 = 0.1247HL_5J7L_143:HL_4WF9_011 = 0.1165HL_5J7L_143:HL_8VTW_010 = 0.0754HL_5J7L_143:HL_5J7L_143 = 0HL_5J7L_143:HL_4XWF_001 = 0.1294HL_5J7L_143:HL_3ADD_003 = 0.2405HL_5J7L_143:HL_1WZ2_007 = 0.2914HL_5J7L_143:HL_2QUS_003 = 0.3186HL_5J7L_143:HL_2QUW_003 = 0.343HL_4XWF_001:HL_4KR9_002 = 0.6006HL_4XWF_001:HL_6D12_001 = 0.3416HL_4XWF_001:HL_2OEU_002 = 0.4329HL_4XWF_001:HL_4V9F_011 = 0.1809HL_4XWF_001:HL_7A0S_011 = 0.1976HL_4XWF_001:HL_7A0S_003 = 0.3883HL_4XWF_001:HL_8VTW_003 = 0.3852HL_4XWF_001:HL_5J7L_136 = 0.3378HL_4XWF_001:HL_4WF9_003 = 0.1183HL_4XWF_001:HL_2BH2_002 = 0.7122HL_4XWF_001:HL_4WF9_011 = 0.203HL_4XWF_001:HL_8VTW_010 = 0.1677HL_4XWF_001:HL_5J7L_143 = 0.1294HL_4XWF_001:HL_4XWF_001 = 0HL_4XWF_001:HL_3ADD_003 = 0.3286HL_4XWF_001:HL_1WZ2_007 = 0.2456HL_4XWF_001:HL_2QUS_003 = 0.6818HL_4XWF_001:HL_2QUW_003 = 0.6844HL_3ADD_003:HL_4KR9_002 = 0.6164HL_3ADD_003:HL_6D12_001 = 0.2958HL_3ADD_003:HL_2OEU_002 = 0.4721HL_3ADD_003:HL_4V9F_011 = 0.2288HL_3ADD_003:HL_7A0S_011 = 0.2643HL_3ADD_003:HL_7A0S_003 = 0.4171HL_3ADD_003:HL_8VTW_003 = 0.397HL_3ADD_003:HL_5J7L_136 = 0.3775HL_3ADD_003:HL_4WF9_003 = 0.1691HL_3ADD_003:HL_2BH2_002 = 0.738HL_3ADD_003:HL_4WF9_011 = 0.2948HL_3ADD_003:HL_8VTW_010 = 0.243HL_3ADD_003:HL_5J7L_143 = 0.2405HL_3ADD_003:HL_4XWF_001 = 0.3286HL_3ADD_003:HL_3ADD_003 = 0HL_3ADD_003:HL_1WZ2_007 = 0.1539HL_3ADD_003:HL_2QUS_003 = 0.7381HL_3ADD_003:HL_2QUW_003 = 0.7366HL_1WZ2_007:HL_4KR9_002 = 0.243HL_1WZ2_007:HL_6D12_001 = 0.1542HL_1WZ2_007:HL_2OEU_002 = 0.2347HL_1WZ2_007:HL_4V9F_011 = 0.2702HL_1WZ2_007:HL_7A0S_011 = 0.3303HL_1WZ2_007:HL_7A0S_003 = 0.3416HL_1WZ2_007:HL_8VTW_003 = 0.2431HL_1WZ2_007:HL_5J7L_136 = 0.1951HL_1WZ2_007:HL_4WF9_003 = 0.1691HL_1WZ2_007:HL_2BH2_002 = 0.3223HL_1WZ2_007:HL_4WF9_011 = 0.304HL_1WZ2_007:HL_8VTW_010 = 0.2762HL_1WZ2_007:HL_5J7L_143 = 0.2914HL_1WZ2_007:HL_4XWF_001 = 0.2456HL_1WZ2_007:HL_3ADD_003 = 0.1539HL_1WZ2_007:HL_1WZ2_007 = 0HL_1WZ2_007:HL_2QUS_003 = 0.0835HL_1WZ2_007:HL_2QUW_003 = 0.0984HL_2QUS_003:HL_4KR9_002 = 0.6643HL_2QUS_003:HL_6D12_001 = 0.4611HL_2QUS_003:HL_2OEU_002 = 0.6046HL_2QUS_003:HL_4V9F_011 = 0.298HL_2QUS_003:HL_7A0S_011 = 0.3613HL_2QUS_003:HL_7A0S_003 = 0.7093HL_2QUS_003:HL_8VTW_003 = 0.7193HL_2QUS_003:HL_5J7L_136 = 0.6903HL_2QUS_003:HL_4WF9_003 = 0.1993HL_2QUS_003:HL_2BH2_002 = 0.9211HL_2QUS_003:HL_4WF9_011 = 0.3236HL_2QUS_003:HL_8VTW_010 = 0.2991HL_2QUS_003:HL_5J7L_143 = 0.3186HL_2QUS_003:HL_4XWF_001 = 0.6818HL_2QUS_003:HL_3ADD_003 = 0.7381HL_2QUS_003:HL_1WZ2_007 = 0.0835HL_2QUS_003:HL_2QUS_003 = 0HL_2QUS_003:HL_2QUW_003 = 0.0576HL_2QUW_003:HL_4KR9_002 = 0.6438HL_2QUW_003:HL_6D12_001 = 0.4541HL_2QUW_003:HL_2OEU_002 = 0.5997HL_2QUW_003:HL_4V9F_011 = 0.3065HL_2QUW_003:HL_7A0S_011 = 0.3741HL_2QUW_003:HL_7A0S_003 = 0.7128HL_2QUW_003:HL_8VTW_003 = 0.7227HL_2QUW_003:HL_5J7L_136 = 0.6936HL_2QUW_003:HL_4WF9_003 = 0.2242HL_2QUW_003:HL_2BH2_002 = 0.9234HL_2QUW_003:HL_4WF9_011 = 0.3478HL_2QUW_003:HL_8VTW_010 = 0.3231HL_2QUW_003:HL_5J7L_143 = 0.343HL_2QUW_003:HL_4XWF_001 = 0.6844HL_2QUW_003:HL_3ADD_003 = 0.7366HL_2QUW_003:HL_1WZ2_007 = 0.0984HL_2QUW_003:HL_2QUS_003 = 0.0576HL_2QUW_003:HL_2QUW_003 = 0HL_4KR9_002HL_6D12_001HL_2OEU_002HL_4V9F_011HL_7A0S_011HL_7A0S_003HL_8VTW_003HL_5J7L_136HL_4WF9_003HL_2BH2_002HL_4WF9_011HL_8VTW_010HL_5J7L_143HL_4XWF_001HL_3ADD_003HL_1WZ2_007HL_2QUS_003HL_2QUW_003Discrepancy0.000.200.400.600.80
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