Motif HL_70929.2 Version HL_70929.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7
1	HL_4V9F_038	4V9F	0.9000	0		0	LSU rRNA	G	1557	C	1558	A	1559	U	1560	U	1561	C	1562	G	1563	C	1564	cWW	ncWW
2	HL_4R4V_007	4R4V	0.7353	1		A	VS ribozyme RNA	G	689\|\|\|\|7_556	U	690\|\|\|\|7_556	U	691\|\|\|\|7_556	G	692\|\|\|\|7_556	A	693\|\|\|\|7_556	C	694\|\|\|\|7_556	A	696\|\|\|\|7_556	C	697\|\|\|\|7_556	cWW
3	HL_4R4V_003	4R4V	0.7353	1	T-loop related	A	VS ribozyme RNA	G	689	U	690	U	691	G	692	A	693	C	694	A	696	C	697	cWW
4	HL_4V9F_051	4V9F	0.2103	1		0	LSU rRNA	C	1990	A	1991	U	1992	C	1993	A	1994	G	1995	A	1997	G	1998	cWW
5	HL_5J7L_182	5J7L	0.0805	1		DA	LSU rRNA	G	1949	G	1950	U	1951	A	1952	A	1953	G	1954	U	1956	C	1957	cWW	ncWB
6	HL_4Y4O_151	4Y4O	0.0000	1		2A	LSU rRNA	G	1949	G	1950	U	1951	A	1952	A	1953	G	1954	U	1956	C	1957	cWW
7	HL_4IOA_047	4IOA	0.0952	1		X	LSU rRNA	G	1932	G	1933	U	1934	A	1935	A	1936	G	1937	U	1939	C	1940	cWW	ncWB
8	HL_4WF9_046	4WF9	0.1223	1		X	LSU rRNA	G	1976	G	1977	U	1978	A	1979	A	1980	G	1981	U	1983	C	1984	cWW	ncWB
9	HL_4V8P_132	4V8P	0.3990	1		D1	LSU rRNA	U	2287	C	2288	U	2289	A	2290	A	2291	U	2292	A	2294	G	2295	cWW	ncWW
10	HL_5TBW_050	5TBW	0.3908	1		1	LSU rRNA	U	2292	C	2293	U	2294	A	2295	A	2296	U	2297	A	2299	G	2300	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUAAGUUC	4
GUUGACUAC	2
UCUAAUUAG	2
GCAUUCGC	1
CAUCAGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAAGUU	4
UUGACUA	2
CUAAUUA	2
CAUUCG	1
AUCAGUA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
T-loop related (1)
Basepair signature: cWW-bif-R-tSH-R
Heat map statistics: Min 0.08 | Avg 0.49 | Max 1.00

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