#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 61-62-5
1 HL_3AMU_0013AMU0.86436tRNA D-loopB tRNAU13A14G15C16A21|||CG22cWWncWS
2 HL_1GAX_0041GAX0.58433tRNA D-loopDTRNA(VAL)C913A914G915C916A920G921cWW
3 HL_2ZM5_0012ZM50.00004tRNA D-loop (H)C tRNAC13A14G15U16A21G22cWWncWS
4 HL_3TUP_0013TUP0.12554tRNA D-loopT tRNAC13A14G15U16A21G22cWWncWS
5 HL_3EPH_0013EPH0.22903tRNA D-loopEtRNAC13A14G15U16A21G22cWWcWS

3D structures

Complete motif including flanking bases
SequenceCounts
UAGCCAGGUCAG1
CAGCGGAAG1
CAGUCGGUAG1
CAGUUGGUAG1
CAGUGGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGCCAGGUCA1
AGCGGAA1
AGUCGGUA1
AGUUGGUA1
AGUGGUA1

Release history

Release0.30.40.50.60.70.81.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.151.161.171.18
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-042013-04-062013-05-042013-06-012013-07-032013-08-032013-08-312013-09-282013-11-042013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-152014-07-262014-09-062014-10-09
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (4)
  • tRNA D-loop (H) (1)
  • Basepair signature
    cWW-cWS-R-R
    Heat map statistics
    Min 0.13 | Avg 0.44 | Max 0.90
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