Motif HL_72451.3 Version HL_72451.3 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_026 | 5TBW | 0.4567 | 0 | 1 | LSU rRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 2 | HL_4Y4O_130 | 4Y4O | 0.0000 | 0 | 2A | LSU rRNA | G | 978 | G | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 3 | HL_4V9F_029 | 4V9F | 0.0988 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW |
| 4 | HL_4IOA_027 | 4IOA | 0.2005 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW |
| 5 | HL_5J7L_160 | 5J7L | 0.4378 | 0 | DA | LSU rRNA | G | 978 | A | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 6 | HL_4WF9_028 | 4WF9 | 0.4559 | 0 | X | LSU rRNA | G | 1022 | A | 1023 | A | 1024 | A | 1025 | C | 1026 | A | 1027 | G | 1028 | C | 1029 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACAAC | 2 |
| GAAACAAC | 2 |
| GGAUGAAC | 1 |
| GAAACAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACAA | 2 |
| AAACAA | 2 |
| GAUGAA | 1 |
| AAACAG | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.33 | Max 0.63
Coloring options: