Motif HL_73266.4 Version HL_73266.4 of this group appears in releases 3.54 to 3.61

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-7	4-5
1	HL_7KVT_002	7KVT	0.3625		B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	G	55	C	56	C	57	U	58	U	59	A	60	A	61	A	62	C	63	cWW		ntSW	cSH
2	HL_3RKF_009	3RKF	0.1799		C	Guanine riboswitch	A	59	C	60	U	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		ncSW	cSH
3	HL_5KPY_002	5KPY	0.1742		A	5-hydroxytryptophan RNA aptamer	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
4	HL_1Y27_003	1Y27	0.0686		X	Purine riboswitch	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
5	HL_4FEN_003	4FEN	0.0000		B	A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
6	HL_4LX6_003	4LX6	0.1035		A	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	ncSH
7	HL_5SWD_006	5SWD	0.1107		B	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
8	HL_3LA5_003	3LA5	0.1339		A	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
9	HL_4XNR_003	4XNR	0.3621		X	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
10	HL_1Y26_003	1Y26	0.3838		X	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW
11	HL_2ZNI_002	2ZNI	0.8068		C	bacterial tRNA	A	31	C	32	U	33	C	34	U	35	A	36	A	37	A	38	U	39	cWW	cWW
12	HL_3RG5_010	3RG5	0.8599		B	Selenocysteine transfer RNA	G	31\|\|\|\|1_556	C	32\|\|\|\|1_556	U	33\|\|\|\|1_556	U	34\|\|\|\|1_556	C	35\|\|\|\|1_556	A	36\|\|\|\|1_556	A	37\|\|\|\|1_556	A	38\|\|\|\|1_556	C	39\|\|\|\|1_556	cWW	cWW
13	HL_3RG5_006	3RG5	0.8599	tRNA anticodon loop	B	Selenocysteine transfer RNA	G	31	C	32	U	33	U	34	C	35	A	36	A	37	A	38	C	39	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCUUAAAC	6
ACCGUAAAU	3
GCUUCAAAC	2
ACUGUAAAU	1
ACUCUAAAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCUUAAA	6
CCGUAAA	3
CUUCAAA	2
CUGUAAA	1
CUCUAAA	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (12)
tRNA anticodon loop (1)
Basepair signature: cWW-cWW-cSW-R-cSH
Heat map statistics: Min 0.07 | Avg 0.48 | Max 0.97

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