Motif HL_73266.4 Version HL_73266.4 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7KVT_002 | 7KVT | 0.3625 | 0 | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | G | 55 | C | 56 | C | 57 | U | 58 | U | 59 | A | 60 | A | 61 | A | 62 | C | 63 | cWW | ntSW | cSH | ||
| 2 | HL_3RKF_009 | 3RKF | 0.1799 | 0 | C | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | ncSW | cSH | ||
| 3 | HL_5KPY_002 | 5KPY | 0.1742 | 0 | A | 5-hydroxytryptophan RNA aptamer | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 4 | HL_1Y27_003 | 1Y27 | 0.0686 | 0 | X | Purine riboswitch | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 5 | HL_4FEN_003 | 4FEN | 0.0000 | 0 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 6 | HL_4LX6_003 | 4LX6 | 0.1035 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ncSH | ||
| 7 | HL_5SWD_006 | 5SWD | 0.1107 | 0 | B | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 8 | HL_3LA5_003 | 3LA5 | 0.1339 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 9 | HL_4XNR_003 | 4XNR | 0.3621 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 10 | HL_1Y26_003 | 1Y26 | 0.3838 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | |||
| 11 | HL_2ZNI_002 | 2ZNI | 0.8068 | 0 | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | |||
| 12 | HL_3RG5_010 | 3RG5 | 0.8599 | 0 | B | Selenocysteine transfer RNA | G | 31||||1_556 | C | 32||||1_556 | U | 33||||1_556 | U | 34||||1_556 | C | 35||||1_556 | A | 36||||1_556 | A | 37||||1_556 | A | 38||||1_556 | C | 39||||1_556 | cWW | cWW | |||
| 13 | HL_3RG5_006 | 3RG5 | 0.8599 | 0 | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 6 |
| ACCGUAAAU | 3 |
| GCUUCAAAC | 2 |
| ACUGUAAAU | 1 |
| ACUCUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 6 |
| CCGUAAA | 3 |
| CUUCAAA | 2 |
| CUGUAAA | 1 |
| CUCUAAA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-cSW-R-cSH
- Heat map statistics
- Min 0.07 | Avg 0.48 | Max 0.97
Coloring options: