Motif HL_73266.6 Version HL_73266.6 of this group appears in releases 3.80 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7KVT_002 | 7KVT | 0.1770 | 0 | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | G | 55 | C | 56 | C | 57 | U | 58 | U | 59 | A | 60 | A | 61 | A | 62 | C | 63 | cWW | ntSW | cSH |
| 2 | HL_1Y27_003 | 1Y27 | 0.1063 | 0 | X | Purine riboswitch | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
| 3 | HL_4FEN_003 | 4FEN | 0.0835 | 0 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
| 4 | HL_3LA5_003 | 3LA5 | 0.0807 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH |
| 5 | HL_5SWD_006 | 5SWD | 0.0000 | 0 | B | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH |
| 6 | HL_4LX6_003 | 4LX6 | 0.0908 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ncSH |
| 7 | HL_1Y26_003 | 1Y26 | 0.1491 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | |
| 8 | HL_4XNR_003 | 4XNR | 0.1351 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH |
| 9 | HL_5KPY_002 | 5KPY | 0.1923 | 0 | A | 5-hydroxytryptophan RNA aptamer | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
| 10 | HL_3RKF_009 | 3RKF | 0.2026 | 0 | C | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | ncSW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 6 |
| ACCGUAAAU | 3 |
| ACUGUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 6 |
| CCGUAAA | 3 |
| CUGUAAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Basepair signature
- cWW-F-F-cSW-cSH-F
- Heat map statistics
- Min 0.07 | Avg 0.15 | Max 0.22
Coloring options: