Motif HL_73268.1 Version HL_73268.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5WLH_001 | 5WLH | 0.0448 | 1 | B | pre-crRNA | C | -19 | A | -18 | A | -17 | G | -16 | A | -15 | A | -13 | G | -12 | A | -11 | G | -10 | cWW | csS | cSs |
2 | HL_5W1H_001 | 5W1H | 0.0000 | 1 | B | mature crRNA | C | -19 | A | -18 | A | -17 | G | -16 | A | -15 | A | -13 | G | -12 | A | -11 | G | -10 | cWW | csS | cSs |
3 | HL_9BUN_003 | 9BUN | 0.4292 | 3 | A | RNA (48-MER) | G | 26 | C | 27 | A | 28 | A | 29 | G | 31 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | csS | cSs |
4 | HL_8JY0_003 | 8JY0 | 0.4550 | 3 | B | RhoBAST | G | 42 | C | 43 | A | 44 | A | 45 | G | 47 | A | 50 | A | 51 | C | 52 | C | 53 | cWW | csS | cSs |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAGAAAGAG | 2 |
GCAAGGUUAACC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAGAAAGA | 2 |
CAAGGUUAAC | 2 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-cSS-cSS-F
- Heat map statistics
- Min 0.04 | Avg 0.27 | Max 0.46
Coloring options: