Motif HL_73530.1 Version HL_73530.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6AAY_001 | 6AAY | 0.6859 | 3 | B | C | 37 | A | 38 | U | 39 | U | 42 | G | 44 | cWW |
| 2 | HL_4V88_212 | 4V88 | 0.0000 | 5 | A6 | G | 1188 | A | 1189 | A | 1194 | C | 1195 | C | 1197 | cWW |
| 3 | HL_4RUM_001 | 4RUM | 0.3986 | 2 | A | C | 27 | A | 28 | G | 31 | C | 32 | G | 33 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUUUGG | 1 |
| GACUCAACAC | 1 |
| CAGAGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUUUG | 1 |
| ACUCAACA | 1 |
| AGAGC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.40 | Avg 0.43 | Max 0.85
Coloring options: