Motif HL_73530.2 Version HL_73530.2 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RUM_001 | 4RUM | 0.3829 | 2 | A | NiCo riboswitch | C | 27 | A | 28 | G | 31 | C | 32 | G | 33 | cWW |
| 2 | HL_8C3A_217 | 8C3A | 0.0000 | 5 | CM | SSU rRNA | G | 1173 | A | 1174 | A | 1179 | C | 1180 | C | 1182 | cWW |
| 3 | HL_4V88_212 | 4V88 | 0.1203 | 5 | A6 | SSU rRNA | G | 1188 | A | 1189 | A | 1194 | C | 1195 | C | 1197 | cWW |
| 4 | HL_6AAY_001 | 6AAY | 0.6799 | 3 | B | RNA (52-MER) | C | 37 | A | 38 | U | 39 | U | 42 | G | 44 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUCAACAC | 2 |
| CAGAGCG | 1 |
| CAUUUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCAACA | 2 |
| AGAGC | 1 |
| AUUUUG | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.39 | Max 0.85
Coloring options: