Motif HL_74465.7 Version HL_74465.7 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	1-9	2-8
1	HL_1J1U_002	1J1U	0.5762	0	tRNA anticodon loop	B	tRNA	A	532	C	533	U	534	G	535	U	536	A	537	G	538	A	539	U	540	cWW	ncWW
2	HL_4W23_008	4W23	0.5468	0		2	SSU rRNA	A	415	U	416	C	417	A	418	G	419	G	420	G	421	U	422	U	423	cWW	ncwW
3	HL_1J2B_003	1J2B	0.5864	0		D	tRNA	C	932	C	933	U	934	U	935	A	936	C	937	G	938	A	939	G	940	cWW	ncWW
4	HL_1J2B_001	1J2B	0.4746	0		C	tRNA	C	932	C	933	U	934	U	935	A	936	C	937	G	938	A	939	G	940	cWW	cWW
5	HL_2CV1_005	2CV1	0.3526	0		D	tRNA	C	531	C	532	U	533	C	534	U	535	C	536	A	537	A	538	G	539	cWW	ncWW
6	HL_3W3S_002	3W3S	0.3485	0	tRNA anticodon loop	B	Selenocysteine transfer RNA	A	31	C	32	U	33	U	34	C	35	A	36	A	37	A	38	U	39	cWW	ncWW
7	HL_4P8Z_001	4P8Z	0.3123	0		A	Lariat capping ribozyme	G	23	C	24	U	25	A	26	A	27	U	28	C	29	A	30	C	31	cWW	ncWW
8	HL_4P9R_002	4P9R	0.2701	0		A	RNA (189-MER)	G	241	C	242	U	243	A	244	A	245	U	246	C	247	A	248	C	249	cWW	ncWW
9	HL_2AZX_002	2AZX	0.0000	0		C	tRNA	A	531	C	532	U	533	C	534	C	535	A	536	G	537	A	538	U	539	cWW	ncWW
10	HL_4MGN_007	4MGN	0.2992	0		D	tRNA	C	30	U	31	U	32	G	33	C	34	C	35	A	36	A	37	G	38	cWW
11	HL_1U0B_002	1U0B	0.2765	0	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	G	34	C	35	A	36	A	37	A	38	U	39	cWW
12	HL_3TUP_002	3TUP	0.3542	0	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
13	HL_3WFS_002	3WFS	0.4274	0	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
14	HL_2ZNI_002	2ZNI	0.3885	0	tRNA anticodon loop	C	bacterial tRNA	A	31	C	32	U	33	C	34	U	35	A	36	A	37	A	38	U	39	cWW	cWW
15	HL_2AKE_002	2AKE	0.3913	0	tRNA anticodon loop	B	tRNA	A	31	C	32	U	33	C	34	C	35	A	36	G	37	A	38	U	39	cWW
16	HL_4P5J_002	4P5J	0.6233	0	Anticodon loop related	A	tRNA-like 3' UTR element	C	25	U	26	C	27	G	28	A	29	C	30	A	31	C	32	G	33	cWW
17	HL_4TZZ_002	4TZZ	0.6442	0	tRNA anticodon loop (H)	B	tRNA	C	30	U	31	U	32	G	33	C	34	C	35	A	36	A	37	G	38	cWW
18	HL_1EIY_002	1EIY	0.6415	0	tRNA anticodon loop (H)	C	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACUGAAAAU	3
CCUUACGAG	2
GCUAAUCAC	2
ACUCCAGAU	2
CUUGCCAAG	2
ACUGUAGAU	1
AUCAGGGUU	1
CCUCUCAAG	1
ACUUCAAAU	1
AUUGCAAAU	1
ACUCUAAAU	1
CUCGACACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUGAAAA	3
CUUACGA	2
CUAAUCA	2
CUCCAGA	2
UUGCCAA	2
CUGUAGA	1
UCAGGGU	1
CUCUCAA	1
CUUCAAA	1
UUGCAAA	1
CUCUAAA	1
UCGACAC	1

Release history

Release	1.18
Date	2014-10-09
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_74465.7	Only in the parent motif
HL_74465.6 Compare	HL_4P8Z_001, HL_3W3S_002, HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_1J1U_002, HL_4P5J_002, HL_3TUP_002, HL_3WFS_002, HL_4P9R_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_4MGN_007, HL_1J2B_001, HL_1J2B_003	HL_4TZZ_002, HL_4W23_008

Children motifs

This motif has no children motifs.

Annotations: (8)
tRNA anticodon loop (7)
tRNA anticodon loop (H) (2)
Anticodon loop related (1)
Basepair signature: cWW-bif-R-R-R-R-R
Heat map statistics: Min 0.16 | Avg 0.54 | Max 0.96

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