RNA 3D Hub //

Motif HL_75407.1 Version HL_75407.1 of this group appears in releases 3.80 to 3.84

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 31-3
1 HL_4KR9_0024KR90.36053MRNA (39-MER)G19G20C24cWW
2 HL_6D12_0016D120.24244Chuman 7SK RNA stem-loop 4C309A310G315cWW
3 HL_2OEU_0022OEU0.20085AHammerhead RibozymeC25C26G32cWW
4 HL_4WF9_0114WF90.12242X LSU rRNAC362A363G366cWW
5 HL_7RQB_0117RQB0.121521A LSU rRNAC319A320G323cWW
6 HL_5J7L_1435J7L0.11172DA LSU rRNAG319A320C323cWW
7 HL_4V9F_0114V9F0.000020 LSU rRNAG326A327C330cWW
8 HL_7A0S_0117A0S0.10132X LSU rRNAC330U331G334cWW
9 HL_7A0S_0037A0S0.13503X LSU rRNAG121G122C126cWW
10 HL_7RQB_0037RQB0.179131A LSU rRNAG123G124C128cWW
11 HL_5J7L_1365J7L0.16453DA LSU rRNAG123G124C128cWW
12 HL_4WF9_0034WF90.18223X LSU rRNAG122G123C127cWW
13 HL_4XWF_0014XWF0.18093AZMP/ZTP riboswitchG24G25C29cWW
14 HL_2ZNI_0012ZNI0.20174Cbacterial tRNAC13G14G21cWW
15 HL_2BH2_0022BH20.17056D23S RIBOSOMAL RNA 1932-1968G1949G1950C1957cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAAAC5
GAUAC2
CAUGUGG1
CCAAAUAG1
CAAAG1
CAGAG1
CUCAG1
GGGAAC1
CGAAUAG1
GGUAAGUUC1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA5
AUA2
AUGUG1
CAAAUA1
AAA1
AGA1
UCA1
GGAA1
GAAUA1
GUAAGUU1

Release history

Release3.803.813.823.833.84
Date2024-01-312024-02-282024-03-272024-04-242024-05-22
StatusNew id, > 2 parentsExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (15)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.07 | Avg 0.27 | Max 0.90
    Help

    Coloring options:

    HL_4KR9_002:HL_4KR9_002 = 0HL_4KR9_002:HL_6D12_001 = 0.3585HL_4KR9_002:HL_2OEU_002 = 0.7111HL_4KR9_002:HL_4WF9_011 = 0.3942HL_4KR9_002:HL_7RQB_011 = 0.429HL_4KR9_002:HL_5J7L_143 = 0.4187HL_4KR9_002:HL_4V9F_011 = 0.3605HL_4KR9_002:HL_7A0S_011 = 0.433HL_4KR9_002:HL_7A0S_003 = 0.7712HL_4KR9_002:HL_7RQB_003 = 0.7644HL_4KR9_002:HL_5J7L_136 = 0.7486HL_4KR9_002:HL_4WF9_003 = 0.2991HL_4KR9_002:HL_4XWF_001 = 0.6006HL_4KR9_002:HL_2ZNI_001 = 0.4818HL_4KR9_002:HL_2BH2_002 = 0.9041HL_6D12_001:HL_4KR9_002 = 0.3585HL_6D12_001:HL_6D12_001 = 0HL_6D12_001:HL_2OEU_002 = 0.1701HL_6D12_001:HL_4WF9_011 = 0.2954HL_6D12_001:HL_7RQB_011 = 0.2945HL_6D12_001:HL_5J7L_143 = 0.2794HL_6D12_001:HL_4V9F_011 = 0.2424HL_6D12_001:HL_7A0S_011 = 0.3053HL_6D12_001:HL_7A0S_003 = 0.7849HL_6D12_001:HL_7RQB_003 = 0.8072HL_6D12_001:HL_5J7L_136 = 0.7667HL_6D12_001:HL_4WF9_003 = 0.1929HL_6D12_001:HL_4XWF_001 = 0.3416HL_6D12_001:HL_2ZNI_001 = 0.3415HL_6D12_001:HL_2BH2_002 = 0.4054HL_2OEU_002:HL_4KR9_002 = 0.7111HL_2OEU_002:HL_6D12_001 = 0.1701HL_2OEU_002:HL_2OEU_002 = 0HL_2OEU_002:HL_4WF9_011 = 0.2324HL_2OEU_002:HL_7RQB_011 = 0.2673HL_2OEU_002:HL_5J7L_143 = 0.2737HL_2OEU_002:HL_4V9F_011 = 0.2008HL_2OEU_002:HL_7A0S_011 = 0.2748HL_2OEU_002:HL_7A0S_003 = 0.5341HL_2OEU_002:HL_7RQB_003 = 0.553HL_2OEU_002:HL_5J7L_136 = 0.5084HL_2OEU_002:HL_4WF9_003 = 0.2455HL_2OEU_002:HL_4XWF_001 = 0.4329HL_2OEU_002:HL_2ZNI_001 = 0.3498HL_2OEU_002:HL_2BH2_002 = 0.8224HL_4WF9_011:HL_4KR9_002 = 0.3942HL_4WF9_011:HL_6D12_001 = 0.2954HL_4WF9_011:HL_2OEU_002 = 0.2324HL_4WF9_011:HL_4WF9_011 = 0HL_4WF9_011:HL_7RQB_011 = 0.0952HL_4WF9_011:HL_5J7L_143 = 0.1165HL_4WF9_011:HL_4V9F_011 = 0.1224HL_4WF9_011:HL_7A0S_011 = 0.1442HL_4WF9_011:HL_7A0S_003 = 0.136HL_4WF9_011:HL_7RQB_003 = 0.1481HL_4WF9_011:HL_5J7L_136 = 0.164HL_4WF9_011:HL_4WF9_003 = 0.1909HL_4WF9_011:HL_4XWF_001 = 0.203HL_4WF9_011:HL_2ZNI_001 = 0.1778HL_4WF9_011:HL_2BH2_002 = 0.1505HL_7RQB_011:HL_4KR9_002 = 0.429HL_7RQB_011:HL_6D12_001 = 0.2945HL_7RQB_011:HL_2OEU_002 = 0.2673HL_7RQB_011:HL_4WF9_011 = 0.0952HL_7RQB_011:HL_7RQB_011 = 0HL_7RQB_011:HL_5J7L_143 = 0.067HL_7RQB_011:HL_4V9F_011 = 0.1215HL_7RQB_011:HL_7A0S_011 = 0.115HL_7RQB_011:HL_7A0S_003 = 0.1166HL_7RQB_011:HL_7RQB_003 = 0.1795HL_7RQB_011:HL_5J7L_136 = 0.1864HL_7RQB_011:HL_4WF9_003 = 0.2032HL_7RQB_011:HL_4XWF_001 = 0.176HL_7RQB_011:HL_2ZNI_001 = 0.1271HL_7RQB_011:HL_2BH2_002 = 0.1578HL_5J7L_143:HL_4KR9_002 = 0.4187HL_5J7L_143:HL_6D12_001 = 0.2794HL_5J7L_143:HL_2OEU_002 = 0.2737HL_5J7L_143:HL_4WF9_011 = 0.1165HL_5J7L_143:HL_7RQB_011 = 0.067HL_5J7L_143:HL_5J7L_143 = 0HL_5J7L_143:HL_4V9F_011 = 0.1117HL_5J7L_143:HL_7A0S_011 = 0.1071HL_5J7L_143:HL_7A0S_003 = 0.0864HL_5J7L_143:HL_7RQB_003 = 0.1521HL_5J7L_143:HL_5J7L_136 = 0.1588HL_5J7L_143:HL_4WF9_003 = 0.1666HL_5J7L_143:HL_4XWF_001 = 0.1294HL_5J7L_143:HL_2ZNI_001 = 0.1088HL_5J7L_143:HL_2BH2_002 = 0.1247HL_4V9F_011:HL_4KR9_002 = 0.3605HL_4V9F_011:HL_6D12_001 = 0.2424HL_4V9F_011:HL_2OEU_002 = 0.2008HL_4V9F_011:HL_4WF9_011 = 0.1224HL_4V9F_011:HL_7RQB_011 = 0.1215HL_4V9F_011:HL_5J7L_143 = 0.1117HL_4V9F_011:HL_4V9F_011 = 0HL_4V9F_011:HL_7A0S_011 = 0.1013HL_4V9F_011:HL_7A0S_003 = 0.135HL_4V9F_011:HL_7RQB_003 = 0.1791HL_4V9F_011:HL_5J7L_136 = 0.1645HL_4V9F_011:HL_4WF9_003 = 0.1822HL_4V9F_011:HL_4XWF_001 = 0.1809HL_4V9F_011:HL_2ZNI_001 = 0.2017HL_4V9F_011:HL_2BH2_002 = 0.1705HL_7A0S_011:HL_4KR9_002 = 0.433HL_7A0S_011:HL_6D12_001 = 0.3053HL_7A0S_011:HL_2OEU_002 = 0.2748HL_7A0S_011:HL_4WF9_011 = 0.1442HL_7A0S_011:HL_7RQB_011 = 0.115HL_7A0S_011:HL_5J7L_143 = 0.1071HL_7A0S_011:HL_4V9F_011 = 0.1013HL_7A0S_011:HL_7A0S_011 = 0HL_7A0S_011:HL_7A0S_003 = 0.0991HL_7A0S_011:HL_7RQB_003 = 0.2135HL_7A0S_011:HL_5J7L_136 = 0.2145HL_7A0S_011:HL_4WF9_003 = 0.2221HL_7A0S_011:HL_4XWF_001 = 0.1976HL_7A0S_011:HL_2ZNI_001 = 0.1631HL_7A0S_011:HL_2BH2_002 = 0.1429HL_7A0S_003:HL_4KR9_002 = 0.7712HL_7A0S_003:HL_6D12_001 = 0.7849HL_7A0S_003:HL_2OEU_002 = 0.5341HL_7A0S_003:HL_4WF9_011 = 0.136HL_7A0S_003:HL_7RQB_011 = 0.1166HL_7A0S_003:HL_5J7L_143 = 0.0864HL_7A0S_003:HL_4V9F_011 = 0.135HL_7A0S_003:HL_7A0S_011 = 0.0991HL_7A0S_003:HL_7A0S_003 = 0HL_7A0S_003:HL_7RQB_003 = 0.1407HL_7A0S_003:HL_5J7L_136 = 0.1578HL_7A0S_003:HL_4WF9_003 = 0.2021HL_7A0S_003:HL_4XWF_001 = 0.3883HL_7A0S_003:HL_2ZNI_001 = 0.1275HL_7A0S_003:HL_2BH2_002 = 0.6851HL_7RQB_003:HL_4KR9_002 = 0.7644HL_7RQB_003:HL_6D12_001 = 0.8072HL_7RQB_003:HL_2OEU_002 = 0.553HL_7RQB_003:HL_4WF9_011 = 0.1481HL_7RQB_003:HL_7RQB_011 = 0.1795HL_7RQB_003:HL_5J7L_143 = 0.1521HL_7RQB_003:HL_4V9F_011 = 0.1791HL_7RQB_003:HL_7A0S_011 = 0.2135HL_7RQB_003:HL_7A0S_003 = 0.1407HL_7RQB_003:HL_7RQB_003 = 0HL_7RQB_003:HL_5J7L_136 = 0.0975HL_7RQB_003:HL_4WF9_003 = 0.0936HL_7RQB_003:HL_4XWF_001 = 0.3956HL_7RQB_003:HL_2ZNI_001 = 0.1927HL_7RQB_003:HL_2BH2_002 = 0.6764HL_5J7L_136:HL_4KR9_002 = 0.7486HL_5J7L_136:HL_6D12_001 = 0.7667HL_5J7L_136:HL_2OEU_002 = 0.5084HL_5J7L_136:HL_4WF9_011 = 0.164HL_5J7L_136:HL_7RQB_011 = 0.1864HL_5J7L_136:HL_5J7L_143 = 0.1588HL_5J7L_136:HL_4V9F_011 = 0.1645HL_5J7L_136:HL_7A0S_011 = 0.2145HL_5J7L_136:HL_7A0S_003 = 0.1578HL_5J7L_136:HL_7RQB_003 = 0.0975HL_5J7L_136:HL_5J7L_136 = 0HL_5J7L_136:HL_4WF9_003 = 0.0773HL_5J7L_136:HL_4XWF_001 = 0.3378HL_5J7L_136:HL_2ZNI_001 = 0.2041HL_5J7L_136:HL_2BH2_002 = 0.7069HL_4WF9_003:HL_4KR9_002 = 0.2991HL_4WF9_003:HL_6D12_001 = 0.1929HL_4WF9_003:HL_2OEU_002 = 0.2455HL_4WF9_003:HL_4WF9_011 = 0.1909HL_4WF9_003:HL_7RQB_011 = 0.2032HL_4WF9_003:HL_5J7L_143 = 0.1666HL_4WF9_003:HL_4V9F_011 = 0.1822HL_4WF9_003:HL_7A0S_011 = 0.2221HL_4WF9_003:HL_7A0S_003 = 0.2021HL_4WF9_003:HL_7RQB_003 = 0.0936HL_4WF9_003:HL_5J7L_136 = 0.0773HL_4WF9_003:HL_4WF9_003 = 0HL_4WF9_003:HL_4XWF_001 = 0.1183HL_4WF9_003:HL_2ZNI_001 = 0.2221HL_4WF9_003:HL_2BH2_002 = 0.1684HL_4XWF_001:HL_4KR9_002 = 0.6006HL_4XWF_001:HL_6D12_001 = 0.3416HL_4XWF_001:HL_2OEU_002 = 0.4329HL_4XWF_001:HL_4WF9_011 = 0.203HL_4XWF_001:HL_7RQB_011 = 0.176HL_4XWF_001:HL_5J7L_143 = 0.1294HL_4XWF_001:HL_4V9F_011 = 0.1809HL_4XWF_001:HL_7A0S_011 = 0.1976HL_4XWF_001:HL_7A0S_003 = 0.3883HL_4XWF_001:HL_7RQB_003 = 0.3956HL_4XWF_001:HL_5J7L_136 = 0.3378HL_4XWF_001:HL_4WF9_003 = 0.1183HL_4XWF_001:HL_4XWF_001 = 0HL_4XWF_001:HL_2ZNI_001 = 0.1589HL_4XWF_001:HL_2BH2_002 = 0.7122HL_2ZNI_001:HL_4KR9_002 = 0.4818HL_2ZNI_001:HL_6D12_001 = 0.3415HL_2ZNI_001:HL_2OEU_002 = 0.3498HL_2ZNI_001:HL_4WF9_011 = 0.1778HL_2ZNI_001:HL_7RQB_011 = 0.1271HL_2ZNI_001:HL_5J7L_143 = 0.1088HL_2ZNI_001:HL_4V9F_011 = 0.2017HL_2ZNI_001:HL_7A0S_011 = 0.1631HL_2ZNI_001:HL_7A0S_003 = 0.1275HL_2ZNI_001:HL_7RQB_003 = 0.1927HL_2ZNI_001:HL_5J7L_136 = 0.2041HL_2ZNI_001:HL_4WF9_003 = 0.2221HL_2ZNI_001:HL_4XWF_001 = 0.1589HL_2ZNI_001:HL_2ZNI_001 = 0HL_2ZNI_001:HL_2BH2_002 = 0.1474HL_2BH2_002:HL_4KR9_002 = 0.9041HL_2BH2_002:HL_6D12_001 = 0.4054HL_2BH2_002:HL_2OEU_002 = 0.8224HL_2BH2_002:HL_4WF9_011 = 0.1505HL_2BH2_002:HL_7RQB_011 = 0.1578HL_2BH2_002:HL_5J7L_143 = 0.1247HL_2BH2_002:HL_4V9F_011 = 0.1705HL_2BH2_002:HL_7A0S_011 = 0.1429HL_2BH2_002:HL_7A0S_003 = 0.6851HL_2BH2_002:HL_7RQB_003 = 0.6764HL_2BH2_002:HL_5J7L_136 = 0.7069HL_2BH2_002:HL_4WF9_003 = 0.1684HL_2BH2_002:HL_4XWF_001 = 0.7122HL_2BH2_002:HL_2ZNI_001 = 0.1474HL_2BH2_002:HL_2BH2_002 = 0HL_4KR9_002HL_6D12_001HL_2OEU_002HL_4WF9_011HL_7RQB_011HL_5J7L_143HL_4V9F_011HL_7A0S_011HL_7A0S_003HL_7RQB_003HL_5J7L_136HL_4WF9_003HL_4XWF_001HL_2ZNI_001HL_2BH2_002Discrepancy0.000.200.400.600.80
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