Motif HL_77600.1 Version HL_77600.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8V1I_005 | 8V1I | 0.7224 | 0 | B | MALAT1-associated small cytoplasmic RNA/MEN beta RNA | U | 22 | G | 23 | G | 24 | U | 25 | U | 26 | U | 27 | C | 28 | C | 29 | A | 30 | cWW | |
| 2 | HL_5J7L_135 | 5J7L | 0.6162 | 0 | Pseudoknot geometry (H) | DA | LSU rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
| 3 | HL_4WF9_002 | 4WF9 | 0.4729 | 0 | Pseudoknot geometry | X | LSU rRNA | U | 87 | G | 88 | U | 89 | A | 90 | A | 91 | G | 92 | U | 93 | A | 94 | A | 95 | cWW |
| 4 | HL_9DFE_002 | 9DFE | 0.5451 | 0 | Pseudoknot geometry (H) | 1A | LSU rRNA | C | 87 | G | 88 | G | 89 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW |
| 5 | HL_7JRR_001 | 7JRR | 0.1386 | 0 | A | RNA (50-MER) | G | 12 | A | 13 | A | 14 | C | 15 | C | 16 | A | 17 | U | 18 | C | 19 | C | 20 | cWW | |
| 6 | HL_7JRR_002 | 7JRR | 0.0000 | 0 | A | RNA (50-MER) | G | 39 | G | 40 | A | 41 | U | 42 | G | 43 | G | 44 | U | 45 | U | 46 | C | 47 | cWW | |
| 7 | HL_5X6B_004 | 5X6B | 0.3513 | 0 | P | tRNA | A | 30 | C | 31 | U | 32 | G | 33 | C | 34 | A | 35 | G | 36 | A | 37 | U | 38 | ncWW | |
| 8 | HL_4QLM_002 | 4QLM | 0.5353 | 1 | Pseudoknot geometry | A | cyclic di-AMP riboswitch | U | 72 | C | 74 | U | 75 | C | 76 | C | 77 | U | 78 | U | 79 | C | 80 | G | 81 | cWW |
| 9 | HL_8P9A_121 | 8P9A | 0.4934 | 1 | Pseudoknot geometry (H) | AR | LSU rRNA | G | 303 | U | 305 | A | 306 | A | 307 | A | 308 | U | 309 | U | 310 | C | 311 | C | 312 | cWW |
| 10 | HL_4ENC_001 | 4ENC | 0.5753 | 1 | Pseudoknot geometry | A | Fluoride riboswitch | G | 5 | U | 7 | G | 8 | A | 9 | G | 10 | G | 11 | C | 12 | C | 13 | C | 14 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGUUUCCA | 1 |
| UGAUAUGAA | 1 |
| UGUAAGUAA | 1 |
| CGGUAGCGG | 1 |
| GAACCAUCC | 1 |
| GGAUGGUUC | 1 |
| ACUGCAGAU | 1 |
| UACUCCUUCG | 1 |
| GGUAAAUUCC | 1 |
| GAUGAGGCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUUUCC | 1 |
| GAUAUGA | 1 |
| GUAAGUA | 1 |
| GGUAGCG | 1 |
| AACCAUC | 1 |
| GAUGGUU | 1 |
| CUGCAGA | 1 |
| ACUCCUUC | 1 |
| GUAAAUUC | 1 |
| AUGAGGCC | 1 |
- Annotations
-
- (4)
- Pseudoknot geometry (3)
- Pseudoknot geometry (H) (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.54 | Max 0.93
Coloring options: