Motif HL_78061.1 Version HL_78061.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_029 | 4LFB | 0.0000 | 0 | T-loop with 3 stacked bulged bases | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | C | 1321 | C | 1322 | G | 1323 | cWW | tWH |
| 2 | HL_5J7L_028 | 5J7L | 0.0987 | 0 | T-loop with 3 stacked bulged bases | AA | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | U | 1321 | C | 1322 | G | 1323 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGCAACCCG | 1 |
| CUGCAACUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCAACCC | 1 |
| UGCAACUC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with 3 stacked bulged bases (2)
- Basepair signature
- cWW-R-R-R-tWH-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: