Motif HL_78197.1 Version HL_78197.1 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-4 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5ZQ8_002 | 5ZQ8 | 0.7183 | 2 | D | RNA (12-mer) | C | 744 | G | 745 | U | 746 | A | 749 | A | 750 | A | 751 | A | 752 | G | 753 | cWW | tHH | ||||
| 2 | HL_6UFM_006 | 6UFM | 0.2997 | 0 | Pseudoknot | B | RNA (98-MER) | G | 80 | G | 81 | U | 82 | G | 83 | A | 84 | G | 85 | C | 86 | C | 87 | cWW | ncSH | |||
| 3 | HL_6UFG_003 | 6UFG | 0.0000 | 0 | Pseudoknot | A | RNA (166-MER) | G | 69 | G | 70 | U | 71 | U | 72 | G | 73 | G | 74 | C | 75 | C | 76 | cWW | ncWH | ncSH | ||
| 4 | HL_6UFG_001 | 6UFG | 0.5078 | 0 | A | RNA (166-MER) | G | 13 | C | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | ntWW | ||||
| 5 | HL_9BZC_002 | 9BZC | 0.8230 | 0 | A | RNA (87-MER) | U | 54 | U | 55 | A | 56 | U | 57 | C | 58 | U | 59 | U | 60 | A | 61 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAAAAG | 1 |
| GGUGAGCC | 1 |
| GGUUGGCC | 1 |
| GCGAUCAC | 1 |
| UUAUCUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU(MUM)GAAAA | 1 |
| GUGAGC | 1 |
| GUUGGC | 1 |
| CGAUCA | 1 |
| UAUCUU | 1 |
- Annotations
-
- (3)
- Pseudoknot (2)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.30 | Avg 0.58 | Max 0.97
Coloring options: