Motif HL_78422.1 Version HL_78422.1 of this group appears in releases 1.16 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1F27_001 | 1F27 | 0 | 0 | Pseudoknot geometry | A | RNA (19-mer) | U | 7 | C | 8 | A | 9 | G | 10 | A | 11 | G | 12 | G | 13 | A | 14 | C | 15 | A | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAGAGGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGAGGAC | 1 |
Release history
| Release | 1.16 | 1.17 | 1.18 | 2.0 |
|---|---|---|---|---|
| Date | 2014-07-26 | 2014-09-06 | 2014-10-09 | 2017-04-24 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_78422.1 | Only in the parent motif |
|---|---|---|---|
| HL_09641.1 Compare | HL_1F27_001 | HL_387D_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: