Motif HL_09641.1 Version HL_09641.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 2-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1F27_001 | 1F27 | 0.0000 | 0 | A | RNA (19-mer) | U | 7 | C | 8 | A | 9 | G | 10 | A | 11 | G | 12 | G | 13 | A | 14 | C | 15 | A | 16 | cWW | |||
| 2 | HL_387D_001 | 387D | 0.9067 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAGAGGACA | 1 |
| GAAGUGCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGAGGAC | 1 |
| AAGUGCAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_09641.1 | Only in the parent motif |
|---|---|---|---|
| HL_86889.1 Compare | HL_1F27_001 | HL_387D_001 | HL_2JLT_001 |
| HL_50461.1 Compare | HL_387D_001 | HL_1F27_001 | HL_3B31_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_09641.1 | Only in the child motif |
|---|---|---|---|
| HL_31147.1 Compare | HL_387D_001 | HL_1F27_001 | HL_3B31_001, HL_4CUX_041, HL_1VWW_066 |
| HL_78422.1 Compare | HL_1F27_001 | HL_387D_001 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.91 | Avg 0.45 | Max 0.91
Coloring options: