Motif HL_78457.1 Version HL_78457.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_035 | 4WF9 | 0.1254 | 2 | X | LSU rRNA | G | 1426 | U | 1427 | U | 1428 | G | 1429 | A | 1430 | U | 1431 | A | 1432 | C | 1435 | cWW | tWH |
| 2 | HL_4V8P_117 | 4V8P | 0.0690 | 2 | D1 | LSU rRNA | G | 1624 | U | 1625 | U | 1626 | A | 1627 | A | 1628 | U | 1629 | A | 1630 | C | 1633 | cWW | tWH |
| 3 | HL_4V9F_037 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH |
| 4 | HL_5J7L_168 | 5J7L | 0.0954 | 2 | DA | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 5 | HL_4Y4O_137 | 4Y4O | 0.1231 | 2 | 2A | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 6 | HL_4V5O_068 | 4V5O | 0.8039 | 1 | BA | SSU rRNA | G | 1566 | U | 1567 | C | 1568 | A | 1569 | U | 1570 | C | 1571 | A | 1572 | C | 1574 | cWW | |
| 7 | HL_5X2G_003 | 5X2G | 0.8144 | 1 | B | sgRNA | G | 73 | U | 74 | U | 75 | A | 76 | C | 77 | A | 78 | A | 79 | C | 81 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUAUUC | 4 |
| GUUGAUAUUC | 1 |
| GUCAUCAGC | 1 |
| GUUACAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAUU | 4 |
| UUGAUAUU | 1 |
| UCAUCAG | 1 |
| UUACAAU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tWH-R-tSH-R
- Heat map statistics
- Min 0.07 | Avg 0.41 | Max 0.86
Coloring options: