Motif HL_78614.1 Version HL_78614.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5U3G_003 | 5U3G | 0.7852 | 2 | B | Guanidine-I riboswitch | G | 68 | A | 69 | A | 71 | A | 72 | A | 73 | A | 74 | C | 76 | cWW | tHH |
| 2 | HL_6UFG_001 | 6UFG | 0.2789 | 1 | A | RNA (166-MER) | G | 13 | C | 14 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | ntWW |
| 3 | HL_6UFH_001 | 6UFH | 0.0000 | 1 | A | RNA (167-MER) | G | 13 | C | 14 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | |
| 4 | HL_4LCK_002 | 4LCK | 0.2867 | 2 | B | tRNA | C | 30 | U | 31 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | |
| 5 | HL_3OXE_001 | 3OXE | 0.3667 | 1 | A | domain II of glycine riboswitch | G | 17 | U | 19 | U | 20 | A | 21 | A | 22 | U | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAUCAC | 2 |
| GAAAAAAGC | 1 |
| CUUGCCAAG | 1 |
| GUUUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAUCA | 2 |
| AAAAAAG | 1 |
| UUGCCAA | 1 |
| UUUAAU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.28 | Avg 0.44 | Max 0.92
Coloring options: