Motif HL_79004.1 Version HL_79004.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5H9F_001 | 5H9F | 0.4468 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | |||
| 2 | HL_9E6Q_025 | 9E6Q | 0.0762 | 2 | 1 | LSU rRNA | G | 896 | C | 897 | A | 898 | A | 900 | A | 901 | A | 903 | C | 904 | cWW | cWW | tSW | |
| 3 | HL_8GLP_024 | 8GLP | 0.0000 | 2 | L5 | LSU rRNA | G | 1627 | C | 1628 | G | 1629 | A | 1631 | A | 1632 | A | 1634 | C | 1635 | cWW | cWW | tSW | |
| 4 | HL_9AXU_019 | 9AXU | 0.0410 | 2 | 2 | LSU rRNA | G | 942 | C | 943 | G | 944 | A | 946 | A | 947 | A | 949 | C | 950 | cWW | cWW | tSW | |
| 5 | HL_8P9A_133 | 8P9A | 0.0649 | 2 | AR | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |
| 6 | HL_8OI5_020 | 8OI5 | 0.0635 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | |
| 7 | HL_4WZD_250 | 4WZD | 0.6778 | 0 | 3L | tRNA | U | 47||||P_1 | C | 48||||P_1 | A | 49||||P_1 | U | 50||||P_1 | C | 51||||P_1 | G | 52||||P_1 | A | 53||||P_1 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 4 |
| GCGCCAGC | 1 |
| GCAAAA(OMG)AC | 1 |
| UCAUCGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 4 |
| CGCCAG | 1 |
| CAAAA(OMG)A | 1 |
| CAUCG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-tSW-F
- Heat map statistics
- Min 0.04 | Avg 0.31 | Max 0.80
Coloring options: