Motif HL_79069.1 Version HL_79069.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_074 | 3J9W | 0.7790 | 2 | BA | C | 1577 | G | 1578 | A | 1579 | A | 1580 | U | 1582 | U | 1584 | A | 1585 | G | 1586 | U | 1587 | A | 1588 | G | 1589 | cWW | tHW | |||
| 2 | HL_5J7L_138 | 5J7L | 0.0000 | 0 | DA | U | 158 | G | 159 | A | 160 | A | 161 | U | 162 | C | 163 | C | 164 | A | 165 | U | 166 | A | 167 | G | 168 | cWW | tSH | tHW | tHW | cSH |
| 3 | HL_3J9W_040 | 3J9W | 0.2029 | 0 | BA | U | 159 | G | 160 | A | 161 | A | 162 | U | 163 | U | 164 | C | 165 | A | 166 | U | 167 | A | 168 | G | 169 | cWW | tSH | tHW | ntHW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAUAUAGUAG | 1 |
| UGAAUCCAUAG | 1 |
| UGAAUUCAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUAUAGUA | 1 |
| GAAUCCAUA | 1 |
| GAAUUCAUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHW-tHW-R-R-R
- Heat map statistics
- Min 0.20 | Avg 0.40 | Max 0.83
Coloring options: