Motif HL_79272.1 Version HL_79272.1 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ZNP_001 | 4ZNP | 0.6215 | 1 | A | pfI Riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 31 | cWW | ||
| 2 | HL_5J7L_177 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW | ||
| 3 | HL_4IOA_043 | 4IOA | 0.0941 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW | ||
| 4 | HL_4Y4O_146 | 4Y4O | 0.1129 | 0 | 2A | LSU rRNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW | ||
| 5 | HL_4V9F_046 | 4V9F | 0.1772 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW | ||
| 6 | HL_4WF9_042 | 4WF9 | 0.1470 | 0 | X | LSU rRNA | C | 1779 | G | 1780 | C | 1781 | A | 1782 | G | 1783 | cWW | ||
| 7 | HL_3IVK_002 | 3IVK | 0.3421 | 0 | M | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | ||
| 8 | HL_3HHN_007 | 3HHN | 0.3927 | 0 | E | Class I ligase ribozyme, self-ligation product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | ||
| 9 | HL_5MGA_001 | 5MGA | 0.6349 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | G | -9 | U | -8 | G | -6 | cWW | ||
| 10 | HL_5XH7_001 | 5XH7 | 0.7994 | 1 | B | crRNA | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | ||
| 11 | HL_5KK5_001 | 5KK5 | 0.8531 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAG | 4 |
| CGAAG | 3 |
| CUCUUG | 2 |
| GGAAAC | 1 |
| CUGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA | 4 |
| GAA | 3 |
| UCUU | 2 |
| GAAA | 1 |
| UGUU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: