Motif HL_79921.1 Version HL_79921.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-3	2-4
1	HL_7RQB_004	7RQB	0.6311	1		1A	LSU rRNA	G	139	G	140	A	141	A	142	C	142\|\|\|A	cWW
2	HL_3IVK_003	3IVK	0.0944	2	Fab BL3-6 binding hairpin with tSW	M	class I ligase product	G	59	A	61	C	63	A	64	C	65	cWW		tSW
3	HL_6DB9_001	6DB9	0.0748	2	Fab BL3-6 binding hairpin with tSW	R	RNA (60-MER)	G	23	A	25	C	27	A	28	C	29	cWW		tSW
4	HL_4KZD_001	4KZD	0.0855	2	Fab BL3-6 binding hairpin with tSW	R	RNA (84-MER)	G	37	A	39	C	41	A	42	C	43	cWW		tSW
5	HL_8D29_003	8D29	0.0756	2	Fab BL3-6 binding hairpin with tSW	J	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
6	HL_8D29_002	8D29	0.0634	2	Fab BL3-6 binding hairpin with tSW	F	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
7	HL_8DK7_001	8DK7	0.0000	2	Fab BL3-6 binding hairpin with tSW	C	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
8	HL_8D29_001	8D29	0.0981	2	Fab BL3-6 binding hairpin with tSW	C	RNA (34-MER)	G	13	A	15	C	17	A	18	C	19	cWW		tSW
9	HL_6X5M_002	6X5M	0.1256	2	Fab BL3-6 binding hairpin with tSW	r	ggPAN RNA (39-MER)	G	14	A	16	C	18	A	19	C	20	cWW		tSW
10	HL_7SZU_001	7SZU	0.1275	2	Fab BL3-6 binding hairpin with tSW	R	RNA aptamer	G	35	A	37	C	39	A	40	C	41	cWW		tSW
11	HL_7MLX_002	7MLX	0.1333	2	Fab BL3-6 binding hairpin with tSW	R	RNA (65-MER)	G	40	A	42	C	44	A	45	C	46	cWW		tSW
12	HL_8DP3_001	8DP3	0.1308	2	Fab BL3-6 binding hairpin with tSW	R	Enterovirus 5' cloverleaf cis-acting replication element	G	20	A	22	C	24	A	25	C	26	cWW		tSW
13	HL_6OL3_001	6OL3	0.5028	2	Other HL	C	VA RNA	G	64	A	66	C	68	C	69	C	70	cWW	ntSW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAC	11
GGGAAC	1
GAACCCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACA	11
GGAA	1
AACCC	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Fab BL3-6 binding hairpin with tSW (11)
Other HL (1)
(1)
Basepair signature: cWW-tSW-F
Heat map statistics: Min 0.04 | Avg 0.23 | Max 0.93

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