Motif HL_80621.1 Version HL_80621.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | 2-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4M4O_001 | 4M4O | 0.0888 | 0 | B | RNA (59-MER) | C | 32 | U | 33 | U | 34 | A | 35 | G | 36 | cWW | cWS | |
| 2 | HL_4M6D_004 | 4M6D | 0.0000 | 0 | H | aptamer | C | 32 | U | 33 | U | 34 | A | 35 | G | 36 | cWW | cWS | |
| 3 | HL_4V88_202 | 4V88 | 0.4780 | 2 | A6 | SSU rRNA | C | 716 | C | 717 | U | 719 | G | 720 | G | 722 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAG | 2 |
| CCUUGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA | 2 |
| CUUGU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWS-F
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.49
Coloring options: