Motif HL_81327.2 Version HL_81327.2 of this group appears in releases 3.22 to 3.61

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4V9K_033	4V9K	0.5454	6	tRNA D-loop	AW	tRNA	C	13	A	14	G	15	A	21	G	22	cWW
2	HL_4V90_032	4V90	0.0000	5	tRNA D-loop	AV	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	ncWS
3	HL_6JXM_001	6JXM	0.2418	4	tRNA D-loop	B	tRNA	C	13	A	14	G	15	A	20	G	21	cWW	ncWS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGUUGGUUAG	1
CAGCCGGUAG	1
CAGUGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUUGGUUA	1
AGCCGGUA	1
AGUGGUA	1

Release history

Release	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61
Date	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (3)
Basepair signature: cWW-cWS-R
Heat map statistics: Min 0.24 | Avg 0.30 | Max 0.56

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