Motif HL_82294.2 Version HL_82294.2 of this group appears in releases 0.5 to 1.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_3U5H_038 | 3U5H | 0.6882 | 0 | 5 | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW | |
2 | HL_3R4F_001 | 3R4F | 0.2461 | 1 | T-loop related | A | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW |
3 | HL_2AW7_025 | 2AW7 | 0.1962 | 1 | A | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
4 | HL_1FJG_025 | 1FJG | 0.1853 | 1 | T-loop related (H) | A | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
5 | HL_2XZM_028 | 2XZM | 0.0000 | 1 | A | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1287 | C | 1288 | cWW | cwW | |
6 | HL_3U5F_030 | 3U5F | 0.2179 | 1 | 6 | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
7 | HL_3U5H_024 | 3U5H | 0.2629 | 1 | 5 | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
8 | HL_4A1B_025 | 4A1B | 0.3897 | 1 | 1 | C | 1104 | U | 1105 | U | 1106 | A | 1107 | A | 1108 | U | 1110 | G | 1111 | cWW | cwW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUAAGUC | 2 |
CUUAAUUG | 2 |
GUUUAUC | 1 |
AUUGAGUU | 1 |
GUUAAUUC | 1 |
CUUAAAUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUAAUU | 3 |
UUAAGU | 2 |
UUUAU | 1 |
UUGAGU | 1 |
UUAAAU | 1 |
Release history
Release | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in HL_82294.2 | Only in the parent motif |
---|---|---|---|
HL_82294.1 Compare | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_2XZM_028, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 | HL_3U5H_038 | HL_3IVK_010 |
HL_85369.1 Compare | HL_3U5H_038 | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_2XZM_028, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 | HL_4A1B_047 |
Children motifs
Child motif | Common motif instances | Only in HL_82294.2 | Only in the child motif |
---|---|---|---|
HL_82294.3 Compare | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_3U5H_038, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 | HL_2XZM_028 | HL_4BPP_029 |
- Annotations
-
- (6)
- T-loop related (H) (1)
- T-loop related (1)
- Basepair signature
- cWW-cWW-tSH-R
- Heat map statistics
- Min 0.14 | Avg 0.33 | Max 0.71
Coloring options: