Motif HL_85369.1 Version HL_85369.1 of this group appears in releases 0.3 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_038 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW |
| 2 | HL_4A1B_047 | 4A1B | 0.8994 | 1 | 1 | 26S RRNA | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUAUC | 1 |
| ACGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUAU | 1 |
| CGCAAU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_85369.1 | Only in the child motif |
|---|---|---|---|
| HL_46981.1 Compare | HL_4A1B_047 | HL_3U5H_038 | HL_2D6F_005 |
| HL_82294.2 Compare | HL_3U5H_038 | HL_4A1B_047 | HL_3U5H_024, HL_3U5F_030, HL_4A1B_025, HL_2XZM_028, HL_1FJG_025, HL_2AW7_025, HL_3R4F_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.90 | Avg 0.45 | Max 0.90
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