Motif HL_82538.1 Version HL_82538.1 of this group appears in releases 1.9 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_076 | 3U5H | 0.6950 | 2 | 8 | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW |
| 2 | HL_4A1C_003 | 4A1C | 0.6104 | 2 | 2 | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW |
| 3 | HL_3V2F_007 | 3V2F | 0.0000 | 1 | A | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW |
| 4 | HL_4IOA_007 | 4IOA | 0.2251 | 1 | X | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW |
| 5 | HL_4C9D_002 | 4C9D | 0.3381 | 0 | D | C | 21 | G | 22 | U | 23 | A | 24 | G | 25 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 1 |
| CAAGUGG | 1 |
| AGAAAU | 1 |
| AGAAUU | 1 |
| CGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 1 |
| AAGUG | 1 |
| GAAA | 1 |
| GAAU | 1 |
| GUA | 1 |
Release history
| Release | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|
| Date | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_82538.1 | Only in the parent motif |
|---|---|---|---|
| HL_23971.1 Compare | HL_3U5H_076, HL_4A1C_003 | HL_3V2F_007, HL_4IOA_007, HL_4C9D_002 | HL_4FY3_011, HL_4IOA_018 |
| HL_98234.1 Compare | HL_4IOA_007 | HL_3V2F_007, HL_4A1C_003, HL_4C9D_002, HL_3U5H_076 | |
| HL_21675.2 Compare | HL_3V2F_007 | HL_4C9D_002, HL_4A1C_003, HL_4IOA_007, HL_3U5H_076 | HL_1S72_007, HL_4A1B_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_82538.1 | Only in the child motif |
|---|---|---|---|
| HL_82538.2 Compare | HL_4C9D_002, HL_4A1C_003, HL_4IOA_007, HL_3U5H_076 | HL_3V2F_007 | HL_4NVV_006 |
Coloring options: