Motif HL_82739.1 Version HL_82739.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3	1-3
1	HL_2BH2_002	2BH2	0.3223	6	D	23S RIBOSOMAL RNA 1932-1968	G	1949	G	1950	C	1957	cWW
2	HL_7A0S_011	7A0S	0.3303	2	X	LSU rRNA	C	330	U	331	G	334	cWW
3	HL_7A0S_003	7A0S	0.3416	3	X	LSU rRNA	G	121	G	122	C	126	cWW
4	HL_2ZNI_001	2ZNI	0.3482	4	C	bacterial tRNA	C	13	G	14	G	21	cWW
5	HL_4XWF_001	4XWF	0.2456	3	A	ZMP/ZTP riboswitch	G	24	G	25	C	29	cWW
6	HL_5J7L_143	5J7L	0.2914	2	DA	LSU rRNA	G	319	A	320	C	323	cWW
7	HL_7RQB_011	7RQB	0.3127	2	1A	LSU rRNA	C	319	A	320	G	323	cWW
8	HL_4WF9_011	4WF9	0.3040	2	X	LSU rRNA	C	362	A	363	G	366	cWW
9	HL_7RQB_003	7RQB	0.2313	3	1A	LSU rRNA	G	123	G	124	C	128	cWW
10	HL_5J7L_136	5J7L	0.1951	3	DA	LSU rRNA	G	123	G	124	C	128	cWW
11	HL_4WF9_003	4WF9	0.1691	3	X	LSU rRNA	G	122	G	123	C	127	cWW
12	HL_2QUS_003	2QUS	0.0835	3	A	Hammerhead ribozyme	C	42	G	43	G	47	cWW
13	HL_2QUW_003	2QUW	0.0984	3	B	Hammerhead ribozyme, cleaved fragment	C	42	G	43	G	47	cWW
14	HL_1WZ2_007	1WZ2	0.0000	3	D	tRNA	C	950	G	951	G	955	cWW
15	HL_4KR9_002	4KR9	0.2430	3	M	RNA (39-MER)	G	19	G	20	C	24	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAAAC	5
CGUGAG	2
GGUAAGUUC	1
CUCAG	1
CGAAUAG	1
GAUAC	1
CAGAG	1
CAAAG	1
GGGAAC	1
CGUAGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	5
GUGA	2
GUAAGUU	1
UCA	1
GAAUA	1
AUA	1
AGA	1
AAA	1
GGAA	1
GUAG	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (15)
Basepair signature: cWW-F
Heat map statistics: Min 0.06 | Avg 0.30 | Max 0.92

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